RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 USP17L1Q7RTZ2 530 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 CCDC191Q8NCU4 936 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 PHAXQ9H814 394 aaKnown RBP10.1□□□□□ -0.79
CLK1-215ENST00000621181 HDAC9Q9UKV0 1011 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 SCAF8Q9UPN6 1271 aaKnown RBP10.1□□□□□ -0.79
CLK1-215ENST00000621181 PITPNM2Q9BZ72 1349 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 PAPPA2Q9BXP8 1791 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 MKI67P46013 3256 aaKnown RBP10.1□□□□□ -0.79
CLK1-215ENST00000621181 ELL2O00472 640 aaPredicted RBP10.1□□□□□ -0.79
CLK1-215ENST00000621181 ZNF609O15014 1411 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 PCCAP05165 728 aaPredicted RBP10.1□□□□□ -0.79
CLK1-215ENST00000621181 TTLL12Q14166 644 aaPredicted RBP10.1□□□□□ -0.79
CLK1-215ENST00000621181 PODNQ7Z5L7 613 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 OGFOD1Q8N543 542 aa10.1□□□□□ -0.79
CLK1-215ENST00000621181 CWC25Q9NXE8 425 aaPredicted RBP10.1□□□□□ -0.79
CLK1-215ENST00000621181 CENPFP49454 3210 aa10.09□□□□□ -0.79
CLK1-215ENST00000621181 ATP2B4P23634 1241 aa10.09□□□□□ -0.79
CLK1-215ENST00000621181 MOB2Q70IA6 237 aa10.09□□□□□ -0.79
CLK1-215ENST00000621181 JARID2Q92833 1246 aaPredicted RBP10.09□□□□□ -0.79
CLK1-215ENST00000621181 FBXW7Q969H0 707 aa10.09□□□□□ -0.79
CLK1-215ENST00000621181 GMLQ99445 158 aa10.09□□□□□ -0.79
CLK1-215ENST00000621181 CDC5LQ99459 802 aaKnown RBP10.09□□□□□ -0.79
CLK1-215ENST00000621181 ADAMTS8Q9UP79 889 aa10.09□□□□□ -0.79
CLK1-215ENST00000621181 PSME4Q14997 1843 aa10.08□□□□□ -0.8
CLK1-215ENST00000621181 DDX58O95786 925 aaKnown RBP10.08□□□□□ -0.8
CLK1-215ENST00000621181 NF2P35240 595 aa10.08□□□□□ -0.8
CLK1-215ENST00000621181 PKN2Q16513 984 aaKnown RBP10.08□□□□□ -0.8
CLK1-215ENST00000621181 PRAMEF18Q5VWM3 479 aa10.08□□□□□ -0.8
CLK1-215ENST00000621181 HPS5Q9UPZ3 1129 aa10.08□□□□□ -0.8
CLK1-215ENST00000621181 UBE2Q2LH0YL09 131 aa10.07□□□□□ -0.8
CLK1-215ENST00000621181 TBC1D8O95759 1140 aa10.07□□□□□ -0.8
CLK1-215ENST00000621181 NBPF9Q3BBW0 867 aa10.07□□□□□ -0.8
CLK1-215ENST00000621181 ZNF296Q8WUU4 475 aaPredicted RBP10.07□□□□□ -0.8
CLK1-215ENST00000621181 CTSWP56202 376 aa10.07□□□□□ -0.8
CLK1-215ENST00000621181 CALD1Q05682 793 aaKnown RBP10.07□□□□□ -0.8
CLK1-215ENST00000621181 MKRN3Q13064 507 aaKnown RBP10.07□□□□□ -0.8
CLK1-215ENST00000621181 PRPF38BQ5VTL8 546 aaKnown RBP10.07□□□□□ -0.8
CLK1-215ENST00000621181 METTL22Q9BUU2 404 aaPredicted RBP10.07□□□□□ -0.8
CLK1-215ENST00000621181 IFT57Q9NWB7 429 aa10.07□□□□□ -0.8
CLK1-215ENST00000621181 SSUH2Q9Y2M2 353 aa10.07□□□□□ -0.8
CLK1-215ENST00000621181 MED23Q9ULK4 1368 aa10.06□□□□□ -0.8
CLK1-215ENST00000621181 WNT10BO00744 389 aa10.06□□□□□ -0.8
CLK1-215ENST00000621181 ZNF853P0CG23 659 aa10.06□□□□□ -0.8
CLK1-215ENST00000621181 GNAI1P63096 354 aa10.06□□□□□ -0.8
CLK1-215ENST00000621181 DDX10Q13206 875 aaKnown RBP10.06□□□□□ -0.8
CLK1-215ENST00000621181 CCDC30Q5VVM6 783 aa10.06□□□□□ -0.8
CLK1-215ENST00000621181 CHMP4AQ9BY43 222 aa10.06□□□□□ -0.8
CLK1-215ENST00000621181 BSDC1Q9NW68 430 aaPredicted RBP10.06□□□□□ -0.8
CLK1-215ENST00000621181 MAP3K2Q9Y2U5 619 aa10.06□□□□□ -0.8
CLK1-215ENST00000621181 MYO3BQ8WXR4 1341 aa10.06□□□□□ -0.8
CLK1-215ENST00000621181 HTTP42858 3142 aa10.06□□□□□ -0.8
CLK1-215ENST00000621181 WTIPA6NIX2 430 aaPredicted RBP10.05□□□□□ -0.8
CLK1-215ENST00000621181 SREBF2Q12772 1141 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 MXD3Q9BW11 206 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 MINPP1Q9UNW1 487 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 GPR25O00155 361 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 TM4SF4P48230 202 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 CCT4P50991 539 aaKnown RBP10.05□□□□□ -0.8
CLK1-215ENST00000621181 NEXNQ0ZGT2 675 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 DACT2Q5SW24 774 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 STRIP1Q5VSL9 837 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 TTLL11Q8NHH1 800 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 COA1Q9GZY4 146 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 GREM2Q9H772 168 aa10.05□□□□□ -0.8
CLK1-215ENST00000621181 MYH3P11055 1940 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 SPEF2Q9C093 1822 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 PI4KAP2A4QPH2 592 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 APAF1O14727 1248 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 SASH1O94885 1247 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 PRKG1Q13976 671 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 TTLL5Q6EMB2 1281 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 ARMC9Q7Z3E5 817 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 PI4KAP1Q8N8J0 262 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 C8orf58Q8NAV2 365 aa10.04□□□□□ -0.8
CLK1-215ENST00000621181 IGHMBP2P38935 993 aaKnown RBP10.03□□□□□ -0.8
CLK1-215ENST00000621181 NOM1Q5C9Z4 860 aaKnown RBP10.03□□□□□ -0.8
CLK1-215ENST00000621181 FBXO46Q6PJ61 603 aaPredicted RBP10.03□□□□□ -0.8
CLK1-215ENST00000621181 KSR2Q6VAB6 950 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 APOBEC3FQ8IUX4 373 aaKnown RBP10.03□□□□□ -0.8
CLK1-215ENST00000621181 KIAA0825Q8IV33 1275 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 BRCA2P51587 3418 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 FKTNO75072 461 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 IGKV5-2P06315 115 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 MMP14P50281 582 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 PTPN12Q05209 780 aaKnown RBP10.03□□□□□ -0.8
CLK1-215ENST00000621181 CWF19L2Q2TBE0 894 aaKnown RBP10.03□□□□□ -0.8
CLK1-215ENST00000621181 UBE3BQ7Z3V4 1068 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 TXNRD3Q86VQ6 643 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 MPHOSPH8Q99549 860 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 STK31Q9BXU1 1019 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 LEMD3Q9Y2U8 911 aa10.03□□□□□ -0.8
CLK1-215ENST00000621181 KCNJ4P48050 445 aa10.02□□□□□ -0.81
CLK1-215ENST00000621181 TSPYL6Q8N831 410 aa10.02□□□□□ -0.81
CLK1-215ENST00000621181 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.02□□□□□ -0.81
CLK1-215ENST00000621181 ANGEL1Q9UNK9 670 aaKnown RBP10.02□□□□□ -0.81
CLK1-215ENST00000621181 ZNF804BA4D1E1 1349 aa10.02□□□□□ -0.81
CLK1-215ENST00000621181 NEURL1BA8MQ27 555 aa10.01□□□□□ -0.81
CLK1-215ENST00000621181 ALDH1A1P00352 501 aa10.01□□□□□ -0.81
CLK1-215ENST00000621181 ITGA6P23229 1130 aa10.01□□□□□ -0.81
CLK1-215ENST00000621181 GTF2IP78347 998 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms