RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 DACT2Q5SW24 774 aa13.14□□□□□ -0.31
TRIM28-210ENST00000597618 SPRYD7Q5W111 196 aa13.14□□□□□ -0.31
TRIM28-210ENST00000597618 CCDC191Q8NCU4 936 aa13.14□□□□□ -0.31
TRIM28-210ENST00000597618 CDC5LQ99459 802 aaKnown RBP13.14□□□□□ -0.31
TRIM28-210ENST00000597618 R3HDMLQ9H3Y0 253 aa13.14□□□□□ -0.31
TRIM28-210ENST00000597618 TRIM17Q9Y577 477 aa13.14□□□□□ -0.31
TRIM28-210ENST00000597618 MANSC4A6NHS7 340 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-210ENST00000597618 SASH1O94885 1247 aa13.13□□□□□ -0.31
TRIM28-210ENST00000597618 INHBEP58166 350 aa13.13□□□□□ -0.31
TRIM28-210ENST00000597618 LDLRAD1Q5T700 205 aa13.13□□□□□ -0.31
TRIM28-210ENST00000597618 STRIP1Q5VSL9 837 aa13.13□□□□□ -0.31
TRIM28-210ENST00000597618 DUSP27Q5VZP5 1158 aa13.13□□□□□ -0.31
TRIM28-210ENST00000597618 FBXW7Q969H0 707 aa13.13□□□□□ -0.31
TRIM28-210ENST00000597618 CCDC85AQ96PX6 553 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-210ENST00000597618 MYD88Q99836 296 aa13.13□□□□□ -0.31
TRIM28-210ENST00000597618 CWC25Q9NXE8 425 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-210ENST00000597618 COL1A1P02452 1464 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-210ENST00000597618 PRKG1Q13976 671 aa13.12□□□□□ -0.31
TRIM28-210ENST00000597618 OTOP1Q7RTM1 612 aa13.12□□□□□ -0.31
TRIM28-210ENST00000597618 IFNL1Q8IU54 200 aa13.12□□□□□ -0.31
TRIM28-210ENST00000597618 MXD3Q9BW11 206 aa13.12□□□□□ -0.31
TRIM28-210ENST00000597618 COA1Q9GZY4 146 aa13.12□□□□□ -0.31
TRIM28-210ENST00000597618 TRIM35Q9UPQ4 493 aa13.12□□□□□ -0.31
TRIM28-210ENST00000597618 POTEFA5A3E0 1075 aa13.11□□□□□ -0.31
TRIM28-210ENST00000597618 ZBTB48P10074 688 aaPredicted RBP13.11□□□□□ -0.31
TRIM28-210ENST00000597618 CTSWP56202 376 aa13.11□□□□□ -0.31
TRIM28-210ENST00000597618 CCDC146Q8IYE0 955 aa13.11□□□□□ -0.31
TRIM28-210ENST00000597618 ERO1AQ96HE7 468 aa13.11□□□□□ -0.31
TRIM28-210ENST00000597618 BSDC1Q9NW68 430 aaPredicted RBP13.11□□□□□ -0.31
TRIM28-210ENST00000597618 ANGEL1Q9UNK9 670 aaKnown RBP13.11□□□□□ -0.31
TRIM28-210ENST00000597618 CCT4P50991 539 aaKnown RBP13.1□□□□□ -0.31
TRIM28-210ENST00000597618 SLC10A4Q96EP9 437 aa13.1□□□□□ -0.31
TRIM28-210ENST00000597618 MINPP1Q9UNW1 487 aa13.1□□□□□ -0.31
TRIM28-210ENST00000597618 KIAA0100Q14667 2235 aaKnown RBP13.09□□□□□ -0.31
TRIM28-210ENST00000597618 DDX58O95786 925 aaKnown RBP13.09□□□□□ -0.31
TRIM28-210ENST00000597618 FXR1P51114 621 aaKnown RBP eCLIP13.09□□□□□ -0.31
TRIM28-210ENST00000597618 RALBP1Q15311 655 aa13.09□□□□□ -0.31
TRIM28-210ENST00000597618 MAP3K11Q16584 847 aa13.09□□□□□ -0.31
TRIM28-210ENST00000597618 JARID2Q92833 1246 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-210ENST00000597618 ARMC5Q96C12 935 aa13.09□□□□□ -0.31
TRIM28-210ENST00000597618 ZBED3Q96IU2 234 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-210ENST00000597618 PHAXQ9H814 394 aaKnown RBP13.09□□□□□ -0.31
TRIM28-210ENST00000597618 PTPN22Q9Y2R2 807 aa13.09□□□□□ -0.31
TRIM28-210ENST00000597618 WTIPA6NIX2 430 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-210ENST00000597618 UNCXA6NJT0 531 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 IGF2BP3O00425 579 aaKnown RBP eCLIP13.08□□□□□ -0.32
TRIM28-210ENST00000597618 PPP1R12BO60237 982 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-210ENST00000597618 TTLL5Q6EMB2 1281 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 OTUD7BQ6GQQ9 843 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 KIAA0825Q8IV33 1275 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 RUNDC1Q96C34 613 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 WNK4Q96J92 1243 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 METTL22Q9BUU2 404 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-210ENST00000597618 DEFB129Q9H1M3 183 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 MBIPQ9NS73 344 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 LEMD3Q9Y2U8 911 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 PPP2R3BQ9Y5P8 575 aa13.08□□□□□ -0.32
TRIM28-210ENST00000597618 RBBP6Q7Z6E9 1792 aaKnown RBP13.07□□□□□ -0.32
TRIM28-210ENST00000597618 ZNF646O15015 1829 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-210ENST00000597618 CRHR2Q13324 411 aa13.07□□□□□ -0.32
TRIM28-210ENST00000597618 TTLL11Q8NHH1 800 aa13.07□□□□□ -0.32
TRIM28-210ENST00000597618 GREM2Q9H772 168 aa13.07□□□□□ -0.32
TRIM28-210ENST00000597618 EFCC1Q9HA90 598 aa13.07□□□□□ -0.32
TRIM28-210ENST00000597618 SSC5DA1L4H1 1573 aa13.07□□□□□ -0.32
TRIM28-210ENST00000597618 CEP290O15078 2479 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 EN2P19622 333 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-210ENST00000597618 IGHMBP2P38935 993 aaKnown RBP13.06□□□□□ -0.32
TRIM28-210ENST00000597618 WDR43Q15061 677 aaKnown RBP eCLIP13.06□□□□□ -0.322e-6■■□□□ 11.4
TRIM28-210ENST00000597618 DLGAP5Q15398 846 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 SUPT20HL1Q3ZLR7 823 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 TXNRD3Q86VQ6 643 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 CD99L2Q8TCZ2 262 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 CLMNQ96JQ2 1002 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 TMEM106CQ9BVX2 250 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 CHMP4AQ9BY43 222 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 FZD1Q9UP38 647 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 ZNF804BA4D1E1 1349 aa13.06□□□□□ -0.32
TRIM28-210ENST00000597618 RANBP2P49792 3224 aaKnown RBP13.05□□□□□ -0.32
TRIM28-210ENST00000597618 SZT2Q5T011 3432 aa13.05□□□□□ -0.32
TRIM28-210ENST00000597618 MYO1BO43795 1136 aa13.05□□□□□ -0.32
TRIM28-210ENST00000597618 IREB2P48200 963 aaKnown RBP13.05□□□□□ -0.32
TRIM28-210ENST00000597618 GTF2IP78347 998 aa13.05□□□□□ -0.32
TRIM28-210ENST00000597618 MTMR14Q8NCE2 650 aa13.05□□□□□ -0.32
TRIM28-210ENST00000597618 ANKRD2Q9GZV1 360 aa13.05□□□□□ -0.32
TRIM28-210ENST00000597618 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-210ENST00000597618 MAP3K2Q9Y2U5 619 aa13.05□□□□□ -0.32
TRIM28-210ENST00000597618 ZNF853P0CG23 659 aa13.04□□□□□ -0.32
TRIM28-210ENST00000597618 SP3Q02447 781 aa13.04□□□□□ -0.32
TRIM28-210ENST00000597618 ZNF333Q96JL9 665 aa13.04□□□□□ -0.32
TRIM28-210ENST00000597618 IFT57Q9NWB7 429 aa13.04□□□□□ -0.32
TRIM28-210ENST00000597618 TRIOBPQ9H2D6 2365 aa13.04□□□□□ -0.32
TRIM28-210ENST00000597618 LAMB1P07942 1786 aa13.04□□□□□ -0.32
TRIM28-210ENST00000597618 ELL2O00472 640 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-210ENST00000597618 IGKV5-2P06315 115 aa13.03□□□□□ -0.32
TRIM28-210ENST00000597618 KLRK1P26718 216 aa13.03□□□□□ -0.32
TRIM28-210ENST00000597618 KCNJ4P48050 445 aa13.03□□□□□ -0.32
TRIM28-210ENST00000597618 GNAI1P63096 354 aa13.03□□□□□ -0.32
TRIM28-210ENST00000597618 CALD1Q05682 793 aaKnown RBP13.03□□□□□ -0.32
TRIM28-210ENST00000597618 NEXNQ0ZGT2 675 aa13.03□□□□□ -0.32
TRIM28-210ENST00000597618 ARHGEF6Q15052 776 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms