RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 PI4KAP2A4QPH2 592 aa22.66■■□□□ 1.22
CLK3-221ENST00000568139 PI4KAP1Q8N8J0 262 aa22.66■■□□□ 1.22
CLK3-221ENST00000568139 GREM2Q9H772 168 aa22.65■■□□□ 1.22
CLK3-221ENST00000568139 CCT4P50991 539 aaKnown RBP22.64■■□□□ 1.21
CLK3-221ENST00000568139 NBPF9Q3BBW0 867 aa22.64■■□□□ 1.21
CLK3-221ENST00000568139 DACT2Q5SW24 774 aa22.64■■□□□ 1.21
CLK3-221ENST00000568139 MOB2Q70IA6 237 aa22.64■■□□□ 1.21
CLK3-221ENST00000568139 CTU1Q7Z7A3 348 aaKnown RBP22.64■■□□□ 1.21
CLK3-221ENST00000568139 SCAF8Q9UPN6 1271 aaKnown RBP22.64■■□□□ 1.21
CLK3-221ENST00000568139 NEXNQ0ZGT2 675 aa22.63■■□□□ 1.21
CLK3-221ENST00000568139 STRIP1Q5VSL9 837 aa22.63■■□□□ 1.21
CLK3-221ENST00000568139 COA1Q9GZY4 146 aa22.63■■□□□ 1.21
CLK3-221ENST00000568139 PDE4DIPQ5VU43 2346 aa22.63■■□□□ 1.21
CLK3-221ENST00000568139 NEURL1BA8MQ27 555 aa22.62■■□□□ 1.21
CLK3-221ENST00000568139 UBE2Q2LH0YL09 131 aa22.62■■□□□ 1.21
CLK3-221ENST00000568139 H7C1W4 665 aa22.62■■□□□ 1.21
CLK3-221ENST00000568139 PRAMEF18Q5VWM3 479 aa22.62■■□□□ 1.21
CLK3-221ENST00000568139 OGFOD1Q8N543 542 aa22.62■■□□□ 1.21
CLK3-221ENST00000568139 MXD3Q9BW11 206 aa22.62■■□□□ 1.21
CLK3-221ENST00000568139 MYO3BQ8WXR4 1341 aa22.61■■□□□ 1.21
CLK3-221ENST00000568139 TNRC18O15417 2968 aaPredicted RBP22.61■■□□□ 1.21
CLK3-221ENST00000568139 WNT10BO00744 389 aa22.61■■□□□ 1.21
CLK3-221ENST00000568139 MMP14P50281 582 aa22.61■■□□□ 1.21
CLK3-221ENST00000568139 CWF19L2Q2TBE0 894 aaKnown RBP22.61■■□□□ 1.21
CLK3-221ENST00000568139 TXNRD3Q86VQ6 643 aa22.61■■□□□ 1.21
CLK3-221ENST00000568139 LEMD3Q9Y2U8 911 aa22.61■■□□□ 1.21
CLK3-221ENST00000568139 STK31Q9BXU1 1019 aa22.6■■□□□ 1.21
CLK3-221ENST00000568139 TM4SF4P48230 202 aa22.59■■□□□ 1.21
CLK3-221ENST00000568139 SOX10P56693 466 aa22.59■■□□□ 1.21
CLK3-221ENST00000568139 TSR2Q969E8 191 aaKnown RBP22.59■■□□□ 1.21
CLK3-221ENST00000568139 PLA2G12BQ9BX93 195 aa22.59■■□□□ 1.21
CLK3-221ENST00000568139 IGHMBP2P38935 993 aaKnown RBP22.58■■□□□ 1.21
CLK3-221ENST00000568139 G2E3Q7L622 706 aa22.58■■□□□ 1.21
CLK3-221ENST00000568139 UBE3BQ7Z3V4 1068 aa22.58■■□□□ 1.21
CLK3-221ENST00000568139 NF2P35240 595 aa22.57■■□□□ 1.2
CLK3-221ENST00000568139 PKN2Q16513 984 aaKnown RBP22.57■■□□□ 1.2
CLK3-221ENST00000568139 TTLL5Q6EMB2 1281 aa22.57■■□□□ 1.2
CLK3-221ENST00000568139 FBXW7Q969H0 707 aa22.57■■□□□ 1.2
CLK3-221ENST00000568139 ZNF804BA4D1E1 1349 aa22.57■■□□□ 1.2
CLK3-221ENST00000568139 TBC1D8O95759 1140 aa22.56■■□□□ 1.2
CLK3-221ENST00000568139 ITGA6P23229 1130 aa22.56■■□□□ 1.2
CLK3-221ENST00000568139 TTLL12Q14166 644 aaPredicted RBP22.56■■□□□ 1.2
CLK3-221ENST00000568139 GCKRQ14397 625 aa22.56■■□□□ 1.2
CLK3-221ENST00000568139 CCDC27Q2M243 656 aa22.56■■□□□ 1.2
CLK3-221ENST00000568139 TWISTNBQ3B726 338 aaPredicted RBP22.56■■□□□ 1.2
CLK3-221ENST00000568139 ZNF296Q8WUU4 475 aaPredicted RBP22.56■■□□□ 1.2
CLK3-221ENST00000568139 ANKRD2Q9GZV1 360 aa22.56■■□□□ 1.2
CLK3-221ENST00000568139 SLC4A2P04920 1241 aa22.55■■□□□ 1.2
CLK3-221ENST00000568139 CSF1RP07333 972 aa22.55■■□□□ 1.2
CLK3-221ENST00000568139 CASP7P55210 303 aa22.55■■□□□ 1.2
CLK3-221ENST00000568139 NOM1Q5C9Z4 860 aaKnown RBP22.55■■□□□ 1.2
CLK3-221ENST00000568139 ZBED3Q96IU2 234 aaPredicted RBP22.55■■□□□ 1.2
CLK3-221ENST00000568139 HPS5Q9UPZ3 1129 aa22.55■■□□□ 1.2
CLK3-221ENST00000568139 CACNA1FO60840 1977 aa22.55■■□□□ 1.2
CLK3-221ENST00000568139 SASH1O94885 1247 aa22.54■■□□□ 1.2
CLK3-221ENST00000568139 KLRK1P26718 216 aa22.54■■□□□ 1.2
CLK3-221ENST00000568139 HDAC9Q9UKV0 1011 aa22.54■■□□□ 1.2
CLK3-221ENST00000568139 PTPN12Q05209 780 aaKnown RBP22.53■■□□□ 1.2
CLK3-221ENST00000568139 ARMC9Q7Z3E5 817 aa22.53■■□□□ 1.2
CLK3-221ENST00000568139 APOBEC3FQ8IUX4 373 aaKnown RBP22.53■■□□□ 1.2
CLK3-221ENST00000568139 KIAA0825Q8IV33 1275 aa22.53■■□□□ 1.2
CLK3-221ENST00000568139 WWC1Q8IX03 1113 aa22.53■■□□□ 1.2
CLK3-221ENST00000568139 MPHOSPH8Q99549 860 aa22.53■■□□□ 1.2
CLK3-221ENST00000568139 GPR25O00155 361 aa22.52■■□□□ 1.2
CLK3-221ENST00000568139 GTF2IP78347 998 aa22.52■■□□□ 1.2
CLK3-221ENST00000568139 CFHR5Q9BXR6 569 aa22.52■■□□□ 1.2
CLK3-221ENST00000568139 CHRNDQ07001 517 aa22.51■■□□□ 1.19
CLK3-221ENST00000568139 SREBF2Q12772 1141 aa22.51■■□□□ 1.19
CLK3-221ENST00000568139 FLIIQ13045 1269 aa22.51■■□□□ 1.19
CLK3-221ENST00000568139 LDLRAD1Q5T700 205 aa22.51■■□□□ 1.19
CLK3-221ENST00000568139 MYH16Q9H6N6 1097 aa22.51■■□□□ 1.19
CLK3-221ENST00000568139 CD209Q9NNX6 404 aa22.51■■□□□ 1.19
CLK3-221ENST00000568139 MKRN3Q13064 507 aaKnown RBP22.5■■□□□ 1.19
CLK3-221ENST00000568139 LINS1Q8NG48 757 aa22.5■■□□□ 1.19
CLK3-221ENST00000568139 DNAAF4Q8WXU2 420 aa22.5■■□□□ 1.19
CLK3-221ENST00000568139 IL16Q14005 1332 aa22.5■■□□□ 1.19
CLK3-221ENST00000568139 IRS2Q9Y4H2 1338 aa22.5■■□□□ 1.19
CLK3-221ENST00000568139 PRKG1Q13976 671 aa22.49■■□□□ 1.19
CLK3-221ENST00000568139 CCDC184Q52MB2 194 aa22.49■■□□□ 1.19
CLK3-221ENST00000568139 C15orf52Q6ZUT6 534 aaKnown RBP22.49■■□□□ 1.19
CLK3-221ENST00000568139 COL1A1P02452 1464 aaPredicted RBP22.48■■□□□ 1.19
CLK3-221ENST00000568139 ECM29Q5VYK3 1845 aa22.48■■□□□ 1.19
CLK3-221ENST00000568139 KCNJ4P48050 445 aa22.48■■□□□ 1.19
CLK3-221ENST00000568139 FKBP5Q13451 457 aaPredicted RBP22.48■■□□□ 1.19
CLK3-221ENST00000568139 NCBP3Q53F19 620 aaKnown RBP22.48■■□□□ 1.19
CLK3-221ENST00000568139 SPRYD7Q5W111 196 aa22.48■■□□□ 1.19
CLK3-221ENST00000568139 MTMR14Q8NCE2 650 aa22.48■■□□□ 1.19
CLK3-221ENST00000568139 PCDH10Q9P2E7 1040 aa22.48■■□□□ 1.19
CLK3-221ENST00000568139 ANGEL1Q9UNK9 670 aaKnown RBP22.48■■□□□ 1.19
CLK3-221ENST00000568139 ANKRD18BA2A2Z9 1011 aa22.47■■□□□ 1.19
CLK3-221ENST00000568139 MAP3K11Q16584 847 aa22.47■■□□□ 1.19
CLK3-221ENST00000568139 FBXO46Q6PJ61 603 aaPredicted RBP22.47■■□□□ 1.19
CLK3-221ENST00000568139 CERS5Q8N5B7 392 aa22.47■■□□□ 1.19
CLK3-221ENST00000568139 DEFB129Q9H1M3 183 aa22.47■■□□□ 1.19
CLK3-221ENST00000568139 R3HDMLQ9H3Y0 253 aa22.47■■□□□ 1.19
CLK3-221ENST00000568139 A0A1B0GUL6 1792 aa22.47■■□□□ 1.19
CLK3-221ENST00000568139 SNAP23O00161 211 aa22.46■■□□□ 1.19
CLK3-221ENST00000568139 FKTNO75072 461 aa22.46■■□□□ 1.19
CLK3-221ENST00000568139 DLGAP5Q15398 846 aa22.46■■□□□ 1.19
CLK3-221ENST00000568139 TAF5LO75529 589 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms