RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CCDC192P0DO97 292 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 GTF2E1P29083 439 aaPredicted RBP15.67■□□□□ 0.1
VPS4A-204ENST00000566354 KCNJ4P48050 445 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 ST3GAL1Q11201 340 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 EPHA10Q5JZY3 1008 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 LARP1BQ659C4 914 aaKnown RBP15.67■□□□□ 0.1
VPS4A-204ENST00000566354 AMIGO3Q86WK7 504 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 MPNDQ8N594 471 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 CCDC191Q8NCU4 936 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 BICC1Q9H694 974 aaKnown RBP15.67■□□□□ 0.1
VPS4A-204ENST00000566354 PA2G4Q9UQ80 394 aaKnown RBP15.67■□□□□ 0.1
VPS4A-204ENST00000566354 ERVV-1B6SEH8 477 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 CASP7P55210 303 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 KRT85P78386 507 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 ANKRD1Q15327 319 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 TPCN1Q9ULQ1 816 aa15.67■□□□□ 0.1
VPS4A-204ENST00000566354 GNPATO15228 680 aa15.66■□□□□ 0.1
VPS4A-204ENST00000566354 ELP1O95163 1332 aa15.66■□□□□ 0.1
VPS4A-204ENST00000566354 CHRM1P11229 460 aaPredicted RBP15.66■□□□□ 0.1
VPS4A-204ENST00000566354 RNF20Q5VTR2 975 aa15.66■□□□□ 0.1
VPS4A-204ENST00000566354 ANKRD36CQ5JPF3 1778 aa15.66■□□□□ 0.1
VPS4A-204ENST00000566354 H7C1W4 665 aa15.66■□□□□ 0.1
VPS4A-204ENST00000566354 CAMTA2O94983 1202 aa15.66■□□□□ 0.1
VPS4A-204ENST00000566354 G3BP1Q13283 466 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS4A-204ENST00000566354 RC3H1Q5TC82 1133 aaKnown RBP15.66■□□□□ 0.1
VPS4A-204ENST00000566354 NECAB1Q8N987 351 aa15.66■□□□□ 0.1
VPS4A-204ENST00000566354 ALDH8A1Q9H2A2 487 aaPredicted RBP15.66■□□□□ 0.1
VPS4A-204ENST00000566354 C4BP0C0L5 1744 aa15.65■□□□□ 0.1
VPS4A-204ENST00000566354 GTF2F1P35269 517 aaKnown RBP eCLIP15.65■□□□□ 0.1
VPS4A-204ENST00000566354 NMIQ13287 307 aaPredicted RBP15.65■□□□□ 0.1
VPS4A-204ENST00000566354 PAXIP1Q6ZW49 1069 aaPredicted RBP15.65■□□□□ 0.1
VPS4A-204ENST00000566354 SLC27A2O14975 620 aa15.65■□□□□ 0.1
VPS4A-204ENST00000566354 SASH1O94885 1247 aa15.65■□□□□ 0.1
VPS4A-204ENST00000566354 TRIM28Q13263 835 aaKnown RBP15.65■□□□□ 0.1
VPS4A-204ENST00000566354 TEX2Q8IWB9 1127 aa15.65■□□□□ 0.1
VPS4A-204ENST00000566354 PROM2Q8N271 834 aa15.65■□□□□ 0.1
VPS4A-204ENST00000566354 FAM227BQ96M60 508 aa15.65■□□□□ 0.1
VPS4A-204ENST00000566354 GOLGA6L6A8MZA4 724 aa15.64■□□□□ 0.09
VPS4A-204ENST00000566354 RPS6KA4O75676 772 aa15.64■□□□□ 0.09
VPS4A-204ENST00000566354 APBA3O96018 575 aa15.64■□□□□ 0.09
VPS4A-204ENST00000566354 HSP90AB3PQ58FF7 597 aa15.64■□□□□ 0.09
VPS4A-204ENST00000566354 BLOC1S2Q6QNY1 142 aa15.64■□□□□ 0.09
VPS4A-204ENST00000566354 NLRP10Q86W26 655 aa15.64■□□□□ 0.09
VPS4A-204ENST00000566354 EAF2Q96CJ1 260 aaPredicted RBP15.64■□□□□ 0.09
VPS4A-204ENST00000566354 UBN2Q6ZU65 1347 aa15.64■□□□□ 0.09
VPS4A-204ENST00000566354 TTC6Q86TZ1 520 aa15.63■□□□□ 0.09
VPS4A-204ENST00000566354 SCAND2PQ9GZW5 306 aaPredicted RBP15.63■□□□□ 0.09
VPS4A-204ENST00000566354 MAP3K11Q16584 847 aa15.63■□□□□ 0.09
VPS4A-204ENST00000566354 TXNRD1Q16881 649 aa15.63■□□□□ 0.09
VPS4A-204ENST00000566354 SMAP1Q8IYB5 467 aaPredicted RBP15.63■□□□□ 0.09
VPS4A-204ENST00000566354 SYNE4Q8N205 404 aa15.63■□□□□ 0.09
VPS4A-204ENST00000566354 FAM200AQ8TCP9 573 aa15.63■□□□□ 0.09
VPS4A-204ENST00000566354 FAM89AQ96GI7 184 aa15.63■□□□□ 0.09
VPS4A-204ENST00000566354 RTCBQ9Y3I0 505 aaKnown RBP15.63■□□□□ 0.09
VPS4A-204ENST00000566354 AP5Z1O43299 807 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 SLC27A3Q5K4L6 730 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 ZNF34Q8IZ26 560 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 KIAA1524Q8TCG1 905 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 NUP62CLQ9H1M0 184 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 HMG20BQ9P0W2 317 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 BCORQ6W2J9 1755 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 RPS6KB1P23443 525 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 TSGA10IPQ3SY00 556 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 CDC37L1Q7L3B6 337 aa15.62■□□□□ 0.09
VPS4A-204ENST00000566354 CCDC8Q9H0W5 538 aaPredicted RBP15.62■□□□□ 0.09
VPS4A-204ENST00000566354 DTNBO60941 627 aa15.61■□□□□ 0.09
VPS4A-204ENST00000566354 C17orf53Q8N3J3 647 aaPredicted RBP15.61■□□□□ 0.09
VPS4A-204ENST00000566354 AK7Q96M32 723 aa15.61■□□□□ 0.09
VPS4A-204ENST00000566354 FSD1Q9BTV5 496 aa15.61■□□□□ 0.09
VPS4A-204ENST00000566354 SRP68Q9UHB9 627 aaKnown RBP15.61■□□□□ 0.09
VPS4A-204ENST00000566354 A0A0D9SFI3 127 aa15.61■□□□□ 0.09
VPS4A-204ENST00000566354 FOXO4P98177 505 aa15.61■□□□□ 0.09
VPS4A-204ENST00000566354 ILDR1Q86SU0 546 aaPredicted RBP15.61■□□□□ 0.09
VPS4A-204ENST00000566354 ARHGEF1Q92888 912 aaKnown RBP15.61■□□□□ 0.09
VPS4A-204ENST00000566354 TNS1Q9HBL0 1735 aaKnown RBP15.61■□□□□ 0.09
VPS4A-204ENST00000566354 FAM177BA6PVY3 158 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 PLSCR1O15162 318 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 PCCAP05165 728 aaPredicted RBP15.6■□□□□ 0.09
VPS4A-204ENST00000566354 RABL6Q3YEC7 729 aaPredicted RBP15.6■□□□□ 0.09
VPS4A-204ENST00000566354 FERMT3Q86UX7 667 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 ZBTB38Q8NAP3 1195 aaPredicted RBP15.6■□□□□ 0.09
VPS4A-204ENST00000566354 MED23Q9ULK4 1368 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 GOLGA6L4A6NEF3 574 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 USPL1Q5W0Q7 1092 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 LMBR1LQ6UX01 489 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 KLHDC4Q8TBB5 520 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 BOLA2Q9H3K6 86 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 KCNF1Q9H3M0 494 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 BCL2L12Q9HB09 334 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 NIP7Q9Y221 180 aaKnown RBP eCLIP15.6■□□□□ 0.09
VPS4A-204ENST00000566354 KIF3AQ9Y496 699 aa15.6■□□□□ 0.09
VPS4A-204ENST00000566354 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.6■□□□□ 0.09
VPS4A-204ENST00000566354 UBR3Q6ZT12 1888 aa15.59■□□□□ 0.09
VPS4A-204ENST00000566354 LIG1P18858 919 aa15.59■□□□□ 0.09
VPS4A-204ENST00000566354 TYRO3Q06418 890 aa15.59■□□□□ 0.09
VPS4A-204ENST00000566354 SUSD4Q5VX71 490 aa15.59■□□□□ 0.09
VPS4A-204ENST00000566354 SPATA32Q96LK8 384 aa15.59■□□□□ 0.09
VPS4A-204ENST00000566354 TNMDQ9H2S6 317 aa15.59■□□□□ 0.09
VPS4A-204ENST00000566354 DDX19AQ9NUU7 478 aaKnown RBP15.59■□□□□ 0.09
VPS4A-204ENST00000566354 NARFQ9UHQ1 456 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms