RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 LEMD3Q9Y2U8 911 aa15.81■□□□□ 0.12
SMAD3-208ENST00000558827 USP17L3A6NCW0 530 aa15.8■□□□□ 0.12
SMAD3-208ENST00000558827 USP17L4A6NCW7 530 aa15.8■□□□□ 0.12
SMAD3-208ENST00000558827 CELF2O95319 508 aaKnown RBP15.8■□□□□ 0.12
SMAD3-208ENST00000558827 HSPA1AP0DMV8 641 aaKnown RBP15.8■□□□□ 0.12
SMAD3-208ENST00000558827 HSPA1BP0DMV9 641 aaKnown RBP15.8■□□□□ 0.12
SMAD3-208ENST00000558827 DEFB115Q30KQ5 88 aa15.8■□□□□ 0.12
SMAD3-208ENST00000558827 LDHAL6AQ6ZMR3 332 aa15.8■□□□□ 0.12
SMAD3-208ENST00000558827 USP17L1Q7RTZ2 530 aa15.8■□□□□ 0.12
SMAD3-208ENST00000558827 BICC1Q9H694 974 aaKnown RBP15.8■□□□□ 0.12
SMAD3-208ENST00000558827 JAG2Q9Y219 1238 aa15.8■□□□□ 0.12
SMAD3-208ENST00000558827 CNTNAP1P78357 1384 aa15.79■□□□□ 0.12
SMAD3-208ENST00000558827 MED23Q9ULK4 1368 aa15.79■□□□□ 0.12
SMAD3-208ENST00000558827 PTPRCP08575 1304 aa15.79■□□□□ 0.12
SMAD3-208ENST00000558827 ADM5C9JUS6 153 aa15.79■□□□□ 0.12
SMAD3-208ENST00000558827 KIF4BQ2VIQ3 1234 aa15.79■□□□□ 0.12
SMAD3-208ENST00000558827 PODNQ7Z5L7 613 aa15.79■□□□□ 0.12
SMAD3-208ENST00000558827 RPS12P25398 132 aaKnown RBP15.78■□□□□ 0.12
SMAD3-208ENST00000558827 GTF2IP78347 998 aa15.78■□□□□ 0.12
SMAD3-208ENST00000558827 HNRNPUQ00839 825 aaKnown RBP eCLIP15.78■□□□□ 0.122e-6■■■□□ 17.7
SMAD3-208ENST00000558827 ALDH1L2Q3SY69 923 aa15.78■□□□□ 0.12
SMAD3-208ENST00000558827 ANKRD44Q8N8A2 993 aa15.78■□□□□ 0.12
SMAD3-208ENST00000558827 KLHDC4Q8TBB5 520 aa15.78■□□□□ 0.12
SMAD3-208ENST00000558827 PGAP2Q9UHJ9 254 aa15.78■□□□□ 0.12
SMAD3-208ENST00000558827 PCNTO95613 3336 aa15.78■□□□□ 0.12
SMAD3-208ENST00000558827 SCARF1Q14162 830 aa15.77■□□□□ 0.12
SMAD3-208ENST00000558827 DACT2Q5SW24 774 aa15.77■□□□□ 0.12
SMAD3-208ENST00000558827 CYP4F22Q6NT55 531 aa15.77■□□□□ 0.12
SMAD3-208ENST00000558827 CDC37L1Q7L3B6 337 aa15.77■□□□□ 0.12
SMAD3-208ENST00000558827 KRT26Q7Z3Y9 468 aa15.77■□□□□ 0.12
SMAD3-208ENST00000558827 GMLQ99445 158 aa15.77■□□□□ 0.12
SMAD3-208ENST00000558827 COA1Q9GZY4 146 aa15.77■□□□□ 0.12
SMAD3-208ENST00000558827 USP44Q9H0E7 712 aa15.77■□□□□ 0.12
SMAD3-208ENST00000558827 USP17L8P0C7I0 530 aa15.76■□□□□ 0.11
SMAD3-208ENST00000558827 LRRC24Q50LG9 513 aa15.76■□□□□ 0.11
SMAD3-208ENST00000558827 TTLL5Q6EMB2 1281 aa15.76■□□□□ 0.11
SMAD3-208ENST00000558827 AGBL3Q8NEM8 1001 aa15.76■□□□□ 0.11
SMAD3-208ENST00000558827 ZC3H15Q8WU90 426 aaKnown RBP15.76■□□□□ 0.11
SMAD3-208ENST00000558827 DCPSQ96C86 337 aaKnown RBP15.76■□□□□ 0.11
SMAD3-208ENST00000558827 CD209Q9NNX6 404 aa15.76■□□□□ 0.11
SMAD3-208ENST00000558827 GGA3Q9NZ52 723 aa15.76■□□□□ 0.11
SMAD3-208ENST00000558827 TNNQ9UQP3 1299 aa15.76■□□□□ 0.11
SMAD3-208ENST00000558827 TRPM7Q96QT4 1865 aa15.76■□□□□ 0.11
SMAD3-208ENST00000558827 RARSP54136 660 aaKnown RBP15.75■□□□□ 0.11
SMAD3-208ENST00000558827 KIAA0825Q8IV33 1275 aa15.75■□□□□ 0.11
SMAD3-208ENST00000558827 MYOZ2Q9NPC6 264 aa15.75■□□□□ 0.11
SMAD3-208ENST00000558827 UTYO14607 1347 aa15.74■□□□□ 0.11
SMAD3-208ENST00000558827 WDR33Q9C0J8 1336 aaKnown RBP15.74■□□□□ 0.11
SMAD3-208ENST00000558827 RASSF10A6NK89 507 aa15.74■□□□□ 0.11
SMAD3-208ENST00000558827 F8W031 263 aaPredicted RBP15.74■□□□□ 0.11
SMAD3-208ENST00000558827 BCAR3O75815 825 aa15.74■□□□□ 0.11
SMAD3-208ENST00000558827 ZNF280AP59817 542 aaPredicted RBP15.74■□□□□ 0.11
SMAD3-208ENST00000558827 NBPF9Q3BBW0 867 aa15.74■□□□□ 0.11
SMAD3-208ENST00000558827 COL13A1Q5TAT6 717 aaPredicted RBP15.74■□□□□ 0.11
SMAD3-208ENST00000558827 ANGEL2Q5VTE6 544 aaKnown RBP15.74■□□□□ 0.11
SMAD3-208ENST00000558827 PRAMEF18Q5VWM3 479 aa15.74■□□□□ 0.11
SMAD3-208ENST00000558827 CAPNS2Q96L46 248 aa15.74■□□□□ 0.11
SMAD3-208ENST00000558827 IRS2Q9Y4H2 1338 aa15.73■□□□□ 0.11
SMAD3-208ENST00000558827 AOC2O75106 756 aa15.73■□□□□ 0.11
SMAD3-208ENST00000558827 SASH1O94885 1247 aa15.73■□□□□ 0.11
SMAD3-208ENST00000558827 GYG1P46976 350 aa15.73■□□□□ 0.11
SMAD3-208ENST00000558827 STRIP1Q5VSL9 837 aa15.73■□□□□ 0.11
SMAD3-208ENST00000558827 FRAT1Q92837 279 aaPredicted RBP15.73■□□□□ 0.11
SMAD3-208ENST00000558827 TLL2Q9Y6L7 1015 aa15.73■□□□□ 0.11
SMAD3-208ENST00000558827 PSME4Q14997 1843 aa15.73■□□□□ 0.11
SMAD3-208ENST00000558827 RABL6Q3YEC7 729 aaPredicted RBP15.72■□□□□ 0.11
SMAD3-208ENST00000558827 METTL24Q5JXM2 366 aa15.72■□□□□ 0.11
SMAD3-208ENST00000558827 SULF1Q8IWU6 871 aa15.72■□□□□ 0.11
SMAD3-208ENST00000558827 API5Q9BZZ5 524 aaKnown RBP15.72■□□□□ 0.11
SMAD3-208ENST00000558827 IQSEC3Q9UPP2 1182 aaPredicted RBP15.72■□□□□ 0.11
SMAD3-208ENST00000558827 RIPOR2Q9Y4F9 1068 aa15.72■□□□□ 0.11
SMAD3-208ENST00000558827 PCDHAC2Q9Y5I4 1007 aa15.72■□□□□ 0.11
SMAD3-208ENST00000558827 A0A1B0GUL6 1792 aa15.72■□□□□ 0.11
SMAD3-208ENST00000558827 FOXN1O15353 648 aa15.71■□□□□ 0.11
SMAD3-208ENST00000558827 ZNF804AQ7Z570 1209 aa15.71■□□□□ 0.11
SMAD3-208ENST00000558827 SAPCD2Q86UD0 394 aa15.71■□□□□ 0.11
SMAD3-208ENST00000558827 CERS5Q8N5B7 392 aa15.71■□□□□ 0.11
SMAD3-208ENST00000558827 CLUAP1Q96AJ1 413 aa15.71■□□□□ 0.11
SMAD3-208ENST00000558827 CT47B1P0C2W7 299 aaPredicted RBP15.7■□□□□ 0.1
SMAD3-208ENST00000558827 UBTFL1P0CB47 393 aaPredicted RBP15.7■□□□□ 0.1
SMAD3-208ENST00000558827 HUNKP57058 714 aa15.7■□□□□ 0.1
SMAD3-208ENST00000558827 OGFOD1Q8N543 542 aa15.7■□□□□ 0.1
SMAD3-208ENST00000558827 CDCA5Q96FF9 252 aa15.7■□□□□ 0.1
SMAD3-208ENST00000558827 MEIS3Q99687 375 aa15.7■□□□□ 0.1
SMAD3-208ENST00000558827 SIL1Q9H173 461 aa15.7■□□□□ 0.1
SMAD3-208ENST00000558827 LRRFIP2Q9Y608 721 aaKnown RBP15.7■□□□□ 0.1
SMAD3-208ENST00000558827 MOB2Q70IA6 237 aa15.69■□□□□ 0.1
SMAD3-208ENST00000558827 FAM84BQ96KN1 310 aaPredicted RBP15.69■□□□□ 0.1
SMAD3-208ENST00000558827 GBA2Q9HCG7 927 aaPredicted RBP15.69■□□□□ 0.1
SMAD3-208ENST00000558827 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.69■□□□□ 0.1
SMAD3-208ENST00000558827 ZNF646O15015 1829 aaPredicted RBP15.68■□□□□ 0.1
SMAD3-208ENST00000558827 WNT10BO00744 389 aa15.68■□□□□ 0.1
SMAD3-208ENST00000558827 IL1R1P14778 569 aa15.68■□□□□ 0.1
SMAD3-208ENST00000558827 HIBADHP31937 336 aaKnown RBP15.68■□□□□ 0.1
SMAD3-208ENST00000558827 ECE1P42892 770 aa15.68■□□□□ 0.1
SMAD3-208ENST00000558827 RFX5P48382 616 aaPredicted RBP15.68■□□□□ 0.1
SMAD3-208ENST00000558827 CHAF1AQ13111 956 aaPredicted RBP15.68■□□□□ 0.1
SMAD3-208ENST00000558827 UBE4AQ14139 1066 aa15.68■□□□□ 0.1
SMAD3-208ENST00000558827 C15orf52Q6ZUT6 534 aaKnown RBP15.68■□□□□ 0.1
SMAD3-208ENST00000558827 AIDAQ96BJ3 306 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms