RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 PSMA5P28066 241 aa20.19■□□□□ 0.82
LDLR-206ENST00000557958 IGHMBP2P38935 993 aaKnown RBP20.19■□□□□ 0.82
LDLR-206ENST00000557958 NUCB2P80303 420 aa20.19■□□□□ 0.82
LDLR-206ENST00000557958 RAB3GAP1Q15042 981 aa20.19■□□□□ 0.82
LDLR-206ENST00000557958 NECTIN1Q15223 517 aa20.19■□□□□ 0.82
LDLR-206ENST00000557958 TMX3Q96JJ7 454 aa20.19■□□□□ 0.82
LDLR-206ENST00000557958 GBP4Q96PP9 640 aa20.19■□□□□ 0.82
LDLR-206ENST00000557958 HELLSQ9NRZ9 838 aa20.19■□□□□ 0.82
LDLR-206ENST00000557958 RGPD3A6NKT7 1758 aaPredicted RBP20.19■□□□□ 0.82
LDLR-206ENST00000557958 LAMB2P55268 1798 aa20.19■□□□□ 0.82
LDLR-206ENST00000557958 RGPD4Q7Z3J3 1758 aa20.19■□□□□ 0.82
LDLR-206ENST00000557958 PDE8BO95263 885 aa20.18■□□□□ 0.82
LDLR-206ENST00000557958 SF3B3Q15393 1217 aaKnown RBP20.18■□□□□ 0.82
LDLR-206ENST00000557958 MMP10P09238 476 aa20.18■□□□□ 0.82
LDLR-206ENST00000557958 PUM3Q15397 648 aaKnown RBP20.18■□□□□ 0.82
LDLR-206ENST00000557958 INTS4Q96HW7 963 aaKnown RBP20.18■□□□□ 0.82
LDLR-206ENST00000557958 ZFYP08048 801 aaPredicted RBP20.17■□□□□ 0.82
LDLR-206ENST00000557958 CREB3L3Q68CJ9 461 aa20.17■□□□□ 0.82
LDLR-206ENST00000557958 RASEFQ8IZ41 740 aa20.17■□□□□ 0.82
LDLR-206ENST00000557958 VGLL2Q8N8G2 317 aa20.17■□□□□ 0.82
LDLR-206ENST00000557958 HELBQ8NG08 1087 aaPredicted RBP20.17■□□□□ 0.82
LDLR-206ENST00000557958 ZNF512BQ96KM6 892 aaPredicted RBP20.17■□□□□ 0.82
LDLR-206ENST00000557958 CDC5LQ99459 802 aaKnown RBP20.17■□□□□ 0.82
LDLR-206ENST00000557958 PDGFDQ9GZP0 370 aaPredicted RBP20.17■□□□□ 0.82
LDLR-206ENST00000557958 PARP3Q9Y6F1 533 aa20.17■□□□□ 0.82
LDLR-206ENST00000557958 NDUFB9Q9Y6M9 179 aa20.17■□□□□ 0.82
LDLR-206ENST00000557958 DDX60Q8IY21 1712 aaKnown RBP20.16■□□□□ 0.82
LDLR-206ENST00000557958 DDX11L8A8MPP1 907 aa20.16■□□□□ 0.82
LDLR-206ENST00000557958 TAF5LO75529 589 aa20.16■□□□□ 0.82
LDLR-206ENST00000557958 CASTP20810 708 aaKnown RBP20.16■□□□□ 0.82
LDLR-206ENST00000557958 ANKRD18AQ8IVF6 992 aa20.16■□□□□ 0.82
LDLR-206ENST00000557958 CYP46A1Q9Y6A2 500 aa20.16■□□□□ 0.82
LDLR-206ENST00000557958 U3KPZ7 1027 aaPredicted RBP20.16■□□□□ 0.82
LDLR-206ENST00000557958 PTMSP20962 102 aa20.16■□□□□ 0.82
LDLR-206ENST00000557958 ADORA1P30542 326 aa20.16■□□□□ 0.82
LDLR-206ENST00000557958 FKBP4Q02790 459 aaKnown RBP eCLIP20.16■□□□□ 0.82
LDLR-206ENST00000557958 KRT32Q14532 448 aa20.16■□□□□ 0.82
LDLR-206ENST00000557958 ZNF589Q86UQ0 364 aaPredicted RBP20.16■□□□□ 0.82
LDLR-206ENST00000557958 LPIN2Q92539 896 aa20.16■□□□□ 0.82
LDLR-206ENST00000557958 JAKMIP1Q96N16 626 aaKnown RBP20.16■□□□□ 0.82
LDLR-206ENST00000557958 MCM4P33991 863 aa20.15■□□□□ 0.82
LDLR-206ENST00000557958 CUL4AQ13619 759 aa20.15■□□□□ 0.82
LDLR-206ENST00000557958 SLC27A2O14975 620 aa20.14■□□□□ 0.81
LDLR-206ENST00000557958 RNF113AO15541 343 aaKnown RBP20.14■□□□□ 0.81
LDLR-206ENST00000557958 UQCRFS1P1P0C7P4 283 aa20.14■□□□□ 0.81
LDLR-206ENST00000557958 SLC5A1P13866 664 aa20.14■□□□□ 0.81
LDLR-206ENST00000557958 TTF1Q15361 905 aaPredicted RBP20.14■□□□□ 0.81
LDLR-206ENST00000557958 VPS53Q5VIR6 699 aa20.14■□□□□ 0.81
LDLR-206ENST00000557958 CELF1Q92879 486 aaKnown RBP20.14■□□□□ 0.81
LDLR-206ENST00000557958 ZMYM1Q5SVZ6 1142 aa20.13■□□□□ 0.81
LDLR-206ENST00000557958 TNPO1Q92973 898 aaKnown RBP20.13■□□□□ 0.81
LDLR-206ENST00000557958 TTC14Q96N46 770 aa20.13■□□□□ 0.81
LDLR-206ENST00000557958 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.13■□□□□ 0.818e-10■■□□□ 11.7
LDLR-206ENST00000557958 ZSWIM6Q9HCJ5 1215 aa20.13■□□□□ 0.81
LDLR-206ENST00000557958 COL24A1Q17RW2 1714 aa20.13■□□□□ 0.81
LDLR-206ENST00000557958 TSGA10IPQ3SY00 556 aa20.13■□□□□ 0.81
LDLR-206ENST00000557958 RPGRQ92834 1020 aaKnown RBP20.13■□□□□ 0.81
LDLR-206ENST00000557958 UPF1Q92900 1129 aaKnown RBP eCLIP20.13■□□□□ 0.81
LDLR-206ENST00000557958 LIMCH1Q9UPQ0 1083 aa20.13■□□□□ 0.81
LDLR-206ENST00000557958 ZSCAN25Q6NSZ9 544 aa20.12■□□□□ 0.81
LDLR-206ENST00000557958 RUFY3Q7L099 469 aa20.12■□□□□ 0.81
LDLR-206ENST00000557958 PDRG1Q9NUG6 133 aa20.12■□□□□ 0.81
LDLR-206ENST00000557958 DSCC1Q9BVC3 393 aa20.11■□□□□ 0.81
LDLR-206ENST00000557958 RPAP1Q9BWH6 1393 aaPredicted RBP20.11■□□□□ 0.81
LDLR-206ENST00000557958 GOLGA6L22H0YM25 854 aa20.11■□□□□ 0.81
LDLR-206ENST00000557958 RPS8P62241 208 aaKnown RBP20.11■□□□□ 0.81
LDLR-206ENST00000557958 ANKRD1Q15327 319 aa20.11■□□□□ 0.81
LDLR-206ENST00000557958 NOL8Q76FK4 1167 aaKnown RBP20.11■□□□□ 0.81
LDLR-206ENST00000557958 ZSCAN31Q96LW9 406 aaPredicted RBP20.11■□□□□ 0.81
LDLR-206ENST00000557958 FGFR2P21802 821 aa20.1■□□□□ 0.81
LDLR-206ENST00000557958 AK2P54819 239 aa20.1■□□□□ 0.81
LDLR-206ENST00000557958 SNAP23O00161 211 aa20.09■□□□□ 0.81
LDLR-206ENST00000557958 ARID4AP29374 1257 aaPredicted RBP20.09■□□□□ 0.81
LDLR-206ENST00000557958 ZAP70P43403 619 aa20.09■□□□□ 0.81
LDLR-206ENST00000557958 CHRNDQ07001 517 aa20.09■□□□□ 0.81
LDLR-206ENST00000557958 BLOC1S2Q6QNY1 142 aa20.09■□□□□ 0.81
LDLR-206ENST00000557958 ZGPATQ8N5A5 531 aaKnown RBP20.09■□□□□ 0.81
LDLR-206ENST00000557958 SH2B1Q9NRF2 756 aaPredicted RBP20.09■□□□□ 0.81
LDLR-206ENST00000557958 ADCK5Q3MIX3 580 aa20.09■□□□□ 0.81
LDLR-206ENST00000557958 CCDC102BQ68D86 513 aa20.09■□□□□ 0.81
LDLR-206ENST00000557958 CLEC17AQ6ZS10 378 aa20.09■□□□□ 0.81
LDLR-206ENST00000557958 BSDC1Q9NW68 430 aaPredicted RBP20.09■□□□□ 0.81
LDLR-206ENST00000557958 ARAP2Q8WZ64 1704 aa20.08■□□□□ 0.81
LDLR-206ENST00000557958 SEC62Q99442 399 aaKnown RBP20.08■□□□□ 0.81
LDLR-206ENST00000557958 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.08■□□□□ 0.81
LDLR-206ENST00000557958 MCAMP43121 646 aa20.07■□□□□ 0.8
LDLR-206ENST00000557958 CCDC129Q6ZRS4 1044 aa20.07■□□□□ 0.8
LDLR-206ENST00000557958 APPBP2Q92624 585 aa20.07■□□□□ 0.8
LDLR-206ENST00000557958 RBM17Q96I25 401 aaKnown RBP20.07■□□□□ 0.8
LDLR-206ENST00000557958 MAST3O60307 1309 aa20.07■□□□□ 0.8
LDLR-206ENST00000557958 SCARF1Q14162 830 aa20.07■□□□□ 0.8
LDLR-206ENST00000557958 WASHC4Q2M389 1173 aa20.07■□□□□ 0.8
LDLR-206ENST00000557958 BRIP1Q9BX63 1249 aa20.07■□□□□ 0.8
LDLR-206ENST00000557958 ALDH8A1Q9H2A2 487 aaPredicted RBP20.07■□□□□ 0.8
LDLR-206ENST00000557958 MINPP1Q9UNW1 487 aa20.07■□□□□ 0.8
LDLR-206ENST00000557958 TAF1P21675 1872 aa20.06■□□□□ 0.8
LDLR-206ENST00000557958 COL4A1P02462 1669 aa20.06■□□□□ 0.8
LDLR-206ENST00000557958 TNRC6CQ9HCJ0 1690 aaKnown RBP20.06■□□□□ 0.8
LDLR-206ENST00000557958 HMGB1P09429 215 aaKnown RBP20.06■□□□□ 0.8
LDLR-206ENST00000557958 GRAPQ13588 217 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms