RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 SRCIN1Q9C0H9 1055 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 OSBPL2Q9H1P3 480 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 NEUROD4Q9HD90 331 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 KBTBD4Q9NVX7 518 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 CNTN3Q9P232 1028 aa4.65□□□□□ -1.67
TRAV28-201ENST00000557548 TTF2Q9UNY4 1162 aaKnown RBP4.65□□□□□ -1.67
TRAV28-201ENST00000557548 TLDC2A0PJX2 215 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 F6X3S4 739 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 SPINT1O43278 529 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 XYLBO75191 536 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 COL8A1P27658 744 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 TYRO3Q06418 890 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 GRM2Q14416 872 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 BMS1Q14692 1282 aaKnown RBP4.64□□□□□ -1.67
TRAV28-201ENST00000557548 SOGA3Q5TF21 947 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 PRICKLE2Q7Z3G6 844 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 LINC00528Q8N1L1 170 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 TSEN34Q9BSV6 310 aaKnown RBP4.64□□□□□ -1.67
TRAV28-201ENST00000557548 SUV39H2Q9H5I1 410 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 LRRC4BQ9NT99 713 aa4.64□□□□□ -1.67
TRAV28-201ENST00000557548 EPB42P16452 691 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 MSX1P28360 303 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 GSTT1P30711 240 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 LRP8Q14114 963 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 SDE2Q6IQ49 451 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 CD163Q86VB7 1156 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 RNF217Q8TC41 542 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 CEP63Q96MT8 703 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 LATS2Q9NRM7 1088 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 ABI2Q9NYB9 513 aaPredicted RBP4.63□□□□□ -1.67
TRAV28-201ENST00000557548 MKL2Q9ULH7 1088 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 TBX22Q9Y458 520 aa4.63□□□□□ -1.67
TRAV28-201ENST00000557548 A0A1W2PNR3 127 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 SLC35F4A4IF30 521 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 RHOQP17081 205 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 CES1P23141 567 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 KIAA0825Q8IV33 1275 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 NLGN1Q8N2Q7 840 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 C3orf58Q8NDZ4 430 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 GLIS3Q8NEA6 775 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 TRIM56Q9BRZ2 755 aaKnown RBP4.62□□□□□ -1.67
TRAV28-201ENST00000557548 SPON2Q9BUD6 331 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 EHD4Q9H223 541 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 TIMMDC1Q9NPL8 285 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 KANSL3Q9P2N6 904 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 ADAMTS1Q9UHI8 967 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 GJA3Q9Y6H8 435 aa4.62□□□□□ -1.67
TRAV28-201ENST00000557548 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.62□□□□□ -1.67
TRAV28-201ENST00000557548 COL17A1Q9UMD9 1497 aaPredicted RBP4.62□□□□□ -1.67
TRAV28-201ENST00000557548 A0A1B0GTH6 734 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 A0A1W2PP55 124 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 FBXO24O75426 580 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 CYP2E1P05181 493 aaPredicted RBP4.61□□□□□ -1.67
TRAV28-201ENST00000557548 SSBP05455 408 aaKnown RBP eCLIP4.61□□□□□ -1.67
TRAV28-201ENST00000557548 FCGRTP55899 365 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 CCDC85BQ15834 202 aaPredicted RBP4.61□□□□□ -1.67
TRAV28-201ENST00000557548 TTC39BQ5VTQ0 682 aaPredicted RBP4.61□□□□□ -1.67
TRAV28-201ENST00000557548 LYSMD3Q7Z3D4 306 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 JAZF1Q86VZ6 243 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 NLRP13Q86W25 1043 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 CKAP2LQ8IYA6 745 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 ANKRD13AQ8IZ07 590 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 RASGRP4Q8TDF6 673 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 NOC4LQ9BVI4 516 aaKnown RBP4.61□□□□□ -1.67
TRAV28-201ENST00000557548 GPAMQ9HCL2 828 aa4.61□□□□□ -1.67
TRAV28-201ENST00000557548 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.61□□□□□ -1.67
TRAV28-201ENST00000557548 TTLL8A6PVC2 850 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 MINDY4BA8MYZ0 360 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 EGFRP00533 1210 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 GBP2P32456 591 aaPredicted RBP4.6□□□□□ -1.67
TRAV28-201ENST00000557548 NASPP49321 788 aaPredicted RBP4.6□□□□□ -1.67
TRAV28-201ENST00000557548 SNRPNP63162 240 aaKnown RBP4.6□□□□□ -1.67
TRAV28-201ENST00000557548 GAS6Q14393 721 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 MAP3K11Q16584 847 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 WDR44Q5JSH3 913 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 KIAA0319Q5VV43 1072 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 PEAR1Q5VY43 1037 aaPredicted RBP4.6□□□□□ -1.67
TRAV28-201ENST00000557548 ZNF746Q6NUN9 644 aaPredicted RBP4.6□□□□□ -1.67
TRAV28-201ENST00000557548 KRT25Q7Z3Z0 450 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 PMEPA1Q969W9 287 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 RSRP1Q9BUV0 290 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 OXCT2Q9BYC2 517 aaPredicted RBP4.6□□□□□ -1.67
TRAV28-201ENST00000557548 RUBCNLQ9H714 662 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 ZNF408Q9H9D4 720 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 BRD7Q9NPI1 651 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 PPP4R2Q9NY27 417 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 TRAK1Q9UPV9 953 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 EFR3BQ9Y2G0 817 aa4.6□□□□□ -1.67
TRAV28-201ENST00000557548 SASH3O75995 380 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 EDN3P14138 238 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 EIF4A3P38919 411 aaKnown RBP4.59□□□□□ -1.67
TRAV28-201ENST00000557548 PWP1Q13610 501 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 EGFLAMQ63HQ2 1017 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 PRPF40BQ6NWY9 871 aaKnown RBP4.59□□□□□ -1.67
TRAV28-201ENST00000557548 RELL1Q8IUW5 271 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 SEC16BQ96JE7 1060 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 TMEM74Q96NL1 305 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 ZCCHC2Q9C0B9 1178 aaKnown RBP4.59□□□□□ -1.67
TRAV28-201ENST00000557548 ABCB6Q9NP58 842 aa4.59□□□□□ -1.67
TRAV28-201ENST00000557548 AKAP2Q9Y2D5 859 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms