RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NBPF9Q3BBW0 867 aa21.81■■□□□ 1.08
VPS29-204ENST00000548259 STRIP1Q5VSL9 837 aa21.81■■□□□ 1.08
VPS29-204ENST00000548259 APOBEC3FQ8IUX4 373 aaKnown RBP21.81■■□□□ 1.08
VPS29-204ENST00000548259 METTL22Q9BUU2 404 aaPredicted RBP21.81■■□□□ 1.08
VPS29-204ENST00000548259 PHAXQ9H814 394 aaKnown RBP21.81■■□□□ 1.08
VPS29-204ENST00000548259 CTSWP56202 376 aa21.8■■□□□ 1.08
VPS29-204ENST00000548259 GNAI1P63096 354 aa21.8■■□□□ 1.08
VPS29-204ENST00000548259 PRAMEF18Q5VWM3 479 aa21.8■■□□□ 1.08
VPS29-204ENST00000548259 COA1Q9GZY4 146 aa21.8■■□□□ 1.08
VPS29-204ENST00000548259 BSDC1Q9NW68 430 aaPredicted RBP21.8■■□□□ 1.08
VPS29-204ENST00000548259 SCN9AQ15858 1988 aa21.79■■□□□ 1.08
VPS29-204ENST00000548259 WNT10BO00744 389 aa21.79■■□□□ 1.08
VPS29-204ENST00000548259 DACT2Q5SW24 774 aa21.79■■□□□ 1.08
VPS29-204ENST00000548259 IFT57Q9NWB7 429 aa21.79■■□□□ 1.08
VPS29-204ENST00000548259 COL4A1P02462 1669 aa21.79■■□□□ 1.08
VPS29-204ENST00000548259 INHBEP58166 350 aa21.78■■□□□ 1.08
VPS29-204ENST00000548259 NEXNQ0ZGT2 675 aa21.78■■□□□ 1.08
VPS29-204ENST00000548259 CCDC30Q5VVM6 783 aa21.78■■□□□ 1.08
VPS29-204ENST00000548259 CFHR5Q9BXR6 569 aa21.78■■□□□ 1.08
VPS29-204ENST00000548259 MINPP1Q9UNW1 487 aa21.78■■□□□ 1.08
VPS29-204ENST00000548259 SCAF8Q9UPN6 1271 aaKnown RBP21.78■■□□□ 1.08
VPS29-204ENST00000548259 ELL2O00472 640 aaPredicted RBP21.77■■□□□ 1.08
VPS29-204ENST00000548259 CCT4P50991 539 aaKnown RBP21.77■■□□□ 1.08
VPS29-204ENST00000548259 MKRN3Q13064 507 aaKnown RBP21.77■■□□□ 1.08
VPS29-204ENST00000548259 JARID2Q92833 1246 aaPredicted RBP21.77■■□□□ 1.08
VPS29-204ENST00000548259 LEMD3Q9Y2U8 911 aa21.77■■□□□ 1.08
VPS29-204ENST00000548259 IGHMBP2P38935 993 aaKnown RBP21.76■■□□□ 1.07
VPS29-204ENST00000548259 ADAMTS8Q9UP79 889 aa21.76■■□□□ 1.07
VPS29-204ENST00000548259 ZNF853P0CG23 659 aa21.75■■□□□ 1.07
VPS29-204ENST00000548259 TTLL5Q6EMB2 1281 aa21.75■■□□□ 1.07
VPS29-204ENST00000548259 MAP3K2Q9Y2U5 619 aa21.75■■□□□ 1.07
VPS29-204ENST00000548259 MANSC4A6NHS7 340 aaPredicted RBP21.74■■□□□ 1.07
VPS29-204ENST00000548259 PTPN12Q05209 780 aaKnown RBP21.74■■□□□ 1.07
VPS29-204ENST00000548259 INTS3Q68E01 1043 aaKnown RBP21.74■■□□□ 1.07
VPS29-204ENST00000548259 TTLL11Q8NHH1 800 aa21.74■■□□□ 1.07
VPS29-204ENST00000548259 SLC10A4Q96EP9 437 aa21.74■■□□□ 1.07
VPS29-204ENST00000548259 ANKRD2Q9GZV1 360 aa21.74■■□□□ 1.07
VPS29-204ENST00000548259 SASH1O94885 1247 aa21.73■■□□□ 1.07
VPS29-204ENST00000548259 PRKG1Q13976 671 aa21.73■■□□□ 1.07
VPS29-204ENST00000548259 SPRYD7Q5W111 196 aa21.73■■□□□ 1.07
VPS29-204ENST00000548259 KSR2Q6VAB6 950 aa21.73■■□□□ 1.07
VPS29-204ENST00000548259 MXD3Q9BW11 206 aa21.73■■□□□ 1.07
VPS29-204ENST00000548259 GREM2Q9H772 168 aa21.73■■□□□ 1.07
VPS29-204ENST00000548259 ANGEL1Q9UNK9 670 aaKnown RBP21.73■■□□□ 1.07
VPS29-204ENST00000548259 PPP1R12BO60237 982 aaPredicted RBP21.72■■□□□ 1.07
VPS29-204ENST00000548259 KCNJ4P48050 445 aa21.72■■□□□ 1.07
VPS29-204ENST00000548259 LDLRAD1Q5T700 205 aa21.72■■□□□ 1.07
VPS29-204ENST00000548259 KIAA0825Q8IV33 1275 aa21.72■■□□□ 1.07
VPS29-204ENST00000548259 STK31Q9BXU1 1019 aa21.72■■□□□ 1.07
VPS29-204ENST00000548259 OTUD7BQ6GQQ9 843 aa21.71■■□□□ 1.07
VPS29-204ENST00000548259 MPHOSPH8Q99549 860 aa21.71■■□□□ 1.07
VPS29-204ENST00000548259 ZNF804BA4D1E1 1349 aa21.71■■□□□ 1.07
VPS29-204ENST00000548259 COL1A1P02452 1464 aaPredicted RBP21.71■■□□□ 1.07
VPS29-204ENST00000548259 PI4KAP2A4QPH2 592 aa21.7■■□□□ 1.06
VPS29-204ENST00000548259 UNCXA6NJT0 531 aa21.7■■□□□ 1.06
VPS29-204ENST00000548259 MYO1BO43795 1136 aa21.7■■□□□ 1.06
VPS29-204ENST00000548259 ZBTB48P10074 688 aaPredicted RBP21.7■■□□□ 1.06
VPS29-204ENST00000548259 DLGAP5Q15398 846 aa21.7■■□□□ 1.06
VPS29-204ENST00000548259 PI4KAP1Q8N8J0 262 aa21.7■■□□□ 1.06
VPS29-204ENST00000548259 TRIM17Q9Y577 477 aa21.7■■□□□ 1.06
VPS29-204ENST00000548259 PPP2R3BQ9Y5P8 575 aa21.7■■□□□ 1.06
VPS29-204ENST00000548259 PSME4Q14997 1843 aa21.7■■□□□ 1.06
VPS29-204ENST00000548259 GTF2IP78347 998 aa21.69■■□□□ 1.06
VPS29-204ENST00000548259 SUPT20HL1Q3ZLR7 823 aa21.69■■□□□ 1.06
VPS29-204ENST00000548259 DEFB129Q9H1M3 183 aa21.69■■□□□ 1.06
VPS29-204ENST00000548259 WTIPA6NIX2 430 aaPredicted RBP21.68■■□□□ 1.06
VPS29-204ENST00000548259 IFNL1Q8IU54 200 aa21.68■■□□□ 1.06
VPS29-204ENST00000548259 C8orf58Q8NAV2 365 aa21.68■■□□□ 1.06
VPS29-204ENST00000548259 ERO1AQ96HE7 468 aa21.68■■□□□ 1.06
VPS29-204ENST00000548259 APAF1O14727 1248 aa21.67■■□□□ 1.06
VPS29-204ENST00000548259 IGKV5-2P06315 115 aa21.67■■□□□ 1.06
VPS29-204ENST00000548259 UBE3BQ7Z3V4 1068 aa21.67■■□□□ 1.06
VPS29-204ENST00000548259 DDX10Q13206 875 aaKnown RBP21.66■■□□□ 1.06
VPS29-204ENST00000548259 MAP3K11Q16584 847 aa21.66■■□□□ 1.06
VPS29-204ENST00000548259 TXNRD3Q86VQ6 643 aa21.66■■□□□ 1.06
VPS29-204ENST00000548259 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.66■■□□□ 1.06
VPS29-204ENST00000548259 NEURL1BA8MQ27 555 aa21.65■■□□□ 1.06
VPS29-204ENST00000548259 ITGA6P23229 1130 aa21.65■■□□□ 1.06
VPS29-204ENST00000548259 OTOP1Q7RTM1 612 aa21.65■■□□□ 1.06
VPS29-204ENST00000548259 ZBED3Q96IU2 234 aaPredicted RBP21.65■■□□□ 1.06
VPS29-204ENST00000548259 R3HDMLQ9H3Y0 253 aa21.65■■□□□ 1.06
VPS29-204ENST00000548259 H7C1W4 665 aa21.64■■□□□ 1.05
VPS29-204ENST00000548259 IREB2P48200 963 aaKnown RBP21.64■■□□□ 1.05
VPS29-204ENST00000548259 ARHGEF6Q15052 776 aa21.64■■□□□ 1.05
VPS29-204ENST00000548259 CWF19L2Q2TBE0 894 aaKnown RBP21.64■■□□□ 1.05
VPS29-204ENST00000548259 MTMR14Q8NCE2 650 aa21.64■■□□□ 1.05
VPS29-204ENST00000548259 MYH16Q9H6N6 1097 aa21.64■■□□□ 1.05
VPS29-204ENST00000548259 WNK4Q96J92 1243 aa21.63■■□□□ 1.05
VPS29-204ENST00000548259 PLA2G12BQ9BX93 195 aa21.63■■□□□ 1.05
VPS29-204ENST00000548259 CD209Q9NNX6 404 aa21.63■■□□□ 1.05
VPS29-204ENST00000548259 ANKRD18BA2A2Z9 1011 aa21.61■■□□□ 1.05
VPS29-204ENST00000548259 CHRNDQ07001 517 aa21.61■■□□□ 1.05
VPS29-204ENST00000548259 HABP4Q5JVS0 413 aaKnown RBP21.61■■□□□ 1.05
VPS29-204ENST00000548259 ZNF804AQ7Z570 1209 aa21.61■■□□□ 1.05
VPS29-204ENST00000548259 EFCC1Q9HA90 598 aa21.61■■□□□ 1.05
VPS29-204ENST00000548259 PTPN22Q9Y2R2 807 aa21.61■■□□□ 1.05
VPS29-204ENST00000548259 GCKRQ14397 625 aa21.6■■□□□ 1.05
VPS29-204ENST00000548259 ANKRD13AQ8IZ07 590 aa21.6■■□□□ 1.05
VPS29-204ENST00000548259 VEZTQ9HBM0 779 aa21.6■■□□□ 1.05
VPS29-204ENST00000548259 IGF2BP3O00425 579 aaKnown RBP eCLIP21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms