RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 NSFL1CQ9UNZ2 370 aaKnown RBP9.44□□□□□ -0.9
PDLIM5-221ENST00000542407 CCDC191Q8NCU4 936 aa9.44□□□□□ -0.9
PDLIM5-221ENST00000542407 CWC25Q9NXE8 425 aaPredicted RBP9.44□□□□□ -0.9
PDLIM5-221ENST00000542407 DDB1Q16531 1140 aa9.43□□□□□ -0.9
PDLIM5-221ENST00000542407 EAF2Q96CJ1 260 aaPredicted RBP9.43□□□□□ -0.9
PDLIM5-221ENST00000542407 TIGD1Q96MW7 591 aa9.43□□□□□ -0.9
PDLIM5-221ENST00000542407 ZNF831Q5JPB2 1677 aa9.43□□□□□ -0.9
PDLIM5-221ENST00000542407 THSD7AQ9UPZ6 1657 aa9.43□□□□□ -0.9
PDLIM5-221ENST00000542407 JCADQ9P266 1359 aa9.43□□□□□ -0.9
PDLIM5-221ENST00000542407 UBAP1LF5GYI3 381 aa9.43□□□□□ -0.9
PDLIM5-221ENST00000542407 CLASRPQ8N2M8 674 aaKnown RBP9.43□□□□□ -0.9
PDLIM5-221ENST00000542407 TRIM28Q13263 835 aaKnown RBP9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 TCIRG1Q13488 830 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 IL17RAQ96F46 866 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 TSPAN18Q96SJ8 248 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 TLR7Q9NYK1 1049 aaKnown RBP9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 COL5A3P25940 1745 aaPredicted RBP9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 REC8O95072 547 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 STARD3NLO95772 234 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 G3BP1Q13283 466 aaKnown RBP eCLIP9.42□□□□□ -0.98e-6■□□□□ 9
PDLIM5-221ENST00000542407 CLEC17AQ6ZS10 378 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 ITFG2Q969R8 447 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 RILPL2Q969X0 211 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 SIL1Q9H173 461 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 MAP3K15Q6ZN16 1313 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 MAP4K4O95819 1239 aaPredicted RBP9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 AACSQ86V21 672 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 ZGPATQ8N5A5 531 aaKnown RBP9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 PIK3R5Q8WYR1 880 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 ARHGEF1Q92888 912 aaKnown RBP9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 ECHDC1Q9NTX5 307 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 ZBTB1Q9Y2K1 713 aa9.42□□□□□ -0.9
PDLIM5-221ENST00000542407 CCDC66A2RUB6 948 aa9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 MPHOSPH10O00566 681 aaKnown RBP9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 GLRX3O76003 335 aaKnown RBP9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 GTF2A1P52655 376 aaPredicted RBP9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 CHAF1AQ13111 956 aaPredicted RBP9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 MYBPC2Q14324 1141 aa9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 VPS72Q15906 364 aa9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 LMBR1LQ6UX01 489 aa9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 PIBF1Q8WXW3 757 aa9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 TSPY26PQ9H489 355 aa9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.41□□□□□ -0.92e-6■■■■■ 86.5
PDLIM5-221ENST00000542407 FNBP4Q8N3X1 1017 aaPredicted RBP9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 USP25Q9UHP3 1055 aa9.41□□□□□ -0.9
PDLIM5-221ENST00000542407 NUP98P52948 1817 aa9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 IFIT2P09913 472 aaKnown RBP9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 HLFQ16534 295 aa9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 GIGYF2Q6Y7W6 1299 aaKnown RBP9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 ATG9AQ7Z3C6 839 aa9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 SYTL4Q96C24 671 aaPredicted RBP9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 STK25O00506 426 aa9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 RABEP1Q15276 862 aa9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 CNTROBQ8N137 903 aa9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 PLA2G12BQ9BX93 195 aa9.4□□□□□ -0.9
PDLIM5-221ENST00000542407 SGSM2O43147 1006 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 TFCP2Q12800 502 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 INTS5Q6P9B9 1019 aaKnown RBP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 KIF6Q6ZMV9 814 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 ACSBG1Q96GR2 724 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 CCDC8Q9H0W5 538 aaPredicted RBP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 DONSONQ9NYP3 566 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 RIOK3O14730 519 aaKnown RBP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 EPB41L2O43491 1005 aaKnown RBP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 NRDCO43847 1150 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 ZMYND10O75800 440 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 PCCAP05165 728 aaPredicted RBP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 SCP2P22307 547 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 GTF2F1P35269 517 aaKnown RBP eCLIP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 IL6STP40189 918 aaPredicted RBP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 TNNT3P45378 269 aaPredicted RBP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 TDO2P48775 406 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 TNNI3KQ59H18 835 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 RIPOR2Q9Y4F9 1068 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 FPGT-TNNI3KV9GXZ4 949 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 BCORQ6W2J9 1755 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 BRD1O95696 1058 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 ZC3H12AQ5D1E8 599 aaKnown RBP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 C8orf37Q96NL8 207 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 DBNLQ9UJU6 430 aaKnown RBP9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 PALD1Q9ULE6 856 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 LRP5O75197 1615 aa9.39□□□□□ -0.91
PDLIM5-221ENST00000542407 MYH14Q7Z406 1995 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 SPATA31A6Q5VVP1 1343 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 CDHR2Q9BYE9 1310 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 ERICH4A6NGS2 130 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 ITPK1Q13572 414 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 FAM98CQ17RN3 349 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 NLRP10Q86W26 655 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 GPATCH3Q96I76 525 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 TRERF1Q96PN7 1200 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 ZNF609O15014 1411 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 PALLDQ8WX93 1383 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 ERVV-1B6SEH8 477 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 CSF1RP07333 972 aa9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 EIF5P55010 431 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 ZBTB38Q8NAP3 1195 aaPredicted RBP9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 LSG1Q9H089 658 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 ZNF330Q9Y3S2 320 aaPredicted RBP9.38□□□□□ -0.91
PDLIM5-221ENST00000542407 NHSQ6T4R5 1651 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms