RNA–Protein interactions for RNA: ENST00000542354.1

TRAV1-1-201, Transcript of T cell receptor alpha variable 1-1, humanhuman

APPRIS P1 BASIC

Gene TRAV1-1, Length 392 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1-201ENST00000542354 TRERF1Q96PN7 1200 aa3.51□□□□□ -1.85
TRAV1-1-201ENST00000542354 CARD14Q9BXL6 1004 aa3.51□□□□□ -1.85
TRAV1-1-201ENST00000542354 PRO3102Q9H379 93 aa3.51□□□□□ -1.85
TRAV1-1-201ENST00000542354 POLMQ9NP87 494 aaPredicted RBP3.51□□□□□ -1.85
TRAV1-1-201ENST00000542354 CCNL1Q9UK58 526 aaPredicted RBP3.51□□□□□ -1.85
TRAV1-1-201ENST00000542354 NRXN1Q9ULB1 1477 aa3.51□□□□□ -1.85
TRAV1-1-201ENST00000542354 SBF1O95248 1867 aa3.51□□□□□ -1.85
TRAV1-1-201ENST00000542354 KAT6BQ8WYB5 2073 aa3.51□□□□□ -1.85
TRAV1-1-201ENST00000542354 KDM6AO15550 1401 aaPredicted RBP3.51□□□□□ -1.85
TRAV1-1-201ENST00000542354 LAMA2P24043 3122 aaKnown RBP3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 ACEP12821 1306 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 GCC2Q8IWJ2 1684 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 MSTNO14793 375 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 ZMYND10O75800 440 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 DDNO94850 711 aaPredicted RBP3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 MMP10P09238 476 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 COL9A2Q14055 689 aaPredicted RBP3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 ERFEQ4G0M1 354 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 PPP1R26Q5T8A7 1209 aaPredicted RBP3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 ZNF385CQ66K41 422 aaPredicted RBP3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 MAP1SQ66K74 1059 aaPredicted RBP3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 SMIM5Q71RC9 77 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 SH3BP5LQ7L8J4 393 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 DPF3Q92784 378 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 KCTD15Q96SI1 283 aaPredicted RBP3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 CCDC87Q9NVE4 849 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 SETXQ7Z333 2677 aaKnown RBP3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 EPG5Q9HCE0 2579 aa3.5□□□□□ -1.85
TRAV1-1-201ENST00000542354 LAMA3Q16787 3333 aa3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 TRPM1Q7Z4N2 1603 aa3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 SLC35F4A4IF30 521 aa3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 SUPT5HO00267 1087 aaKnown RBP3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 CSPP1Q1MSJ5 1256 aa3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 CST9Q5W186 159 aa3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 SAPCD2Q86UD0 394 aa3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 RNF186Q9NXI6 227 aa3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 NR2E3Q9Y5X4 410 aa3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 TUBGCP6Q96RT7 1819 aa3.49□□□□□ -1.85
TRAV1-1-201ENST00000542354 LAMB4A4D0S4 1761 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 AKAP12Q02952 1782 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 N4BP2Q86UW6 1770 aaPredicted RBP3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 TTC21AQ8NDW8 1320 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 FIGNL2A6NMB9 653 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 EPHX2P34913 555 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 CLK2P49760 499 aaKnown RBP3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 ACAP1Q15027 740 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 LYSMD3Q7Z3D4 306 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 WAPLQ7Z5K2 1190 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 PARP9Q8IXQ6 854 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 VWA5B2Q8N398 1253 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 NEDD1Q8NHV4 660 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 MBIPQ9NS73 344 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 FKBPLQ9UIM3 349 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 HACL1Q9UJ83 578 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 ARFGEF1Q9Y6D6 1849 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 NHSQ6T4R5 1651 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 CENPFP49454 3210 aa3.48□□□□□ -1.85
TRAV1-1-201ENST00000542354 FASNP49327 2511 aaKnown RBP3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 PIK3C2AO00443 1686 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 LILRB3O75022 631 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 ADH1AP07327 375 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 GTF2E1P29083 439 aaPredicted RBP3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 GPC1P35052 558 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 MCCD1P59942 119 aaPredicted RBP3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 FMR1Q06787 632 aaKnown RBP eCLIP3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 C4orf48Q5BLP8 95 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 PPP2R2DQ66LE6 453 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 DZIP3Q86Y13 1208 aaKnown RBP3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 SYNE4Q8N205 404 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 NLGN1Q8N2Q7 840 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 SYTL4Q96C24 671 aaPredicted RBP3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 LRFN3Q9BTN0 628 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 RRP7BPQ9NSQ0 103 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 PHF24Q9UPV7 400 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 PCDHB15Q9Y5E8 787 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 FLNBO75369 2602 aaKnown RBP3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 CPDO75976 1380 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 COL5A2P05997 1499 aaPredicted RBP3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 BTAF1O14981 1849 aa3.47□□□□□ -1.85
TRAV1-1-201ENST00000542354 ACIN1Q9UKV3 1341 aaKnown RBP3.46□□□□□ -1.85
TRAV1-1-201ENST00000542354 MAST4O15021 2626 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 YTHDC2Q9H6S0 1430 aaKnown RBP3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 ARHGEF15O94989 841 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 BCRP11274 1271 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 ITGB8P26012 769 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 MAP2K3P46734 347 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 RELBQ01201 579 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 KIF23Q02241 960 aaPredicted RBP3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 LRIT3Q3SXY7 679 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 RNF20Q5VTR2 975 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 MYSM1Q5VVJ2 828 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 ERMP1Q7Z2K6 904 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 TRIM22Q8IYM9 498 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 NGDNQ8NEJ9 315 aaKnown RBP3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 MAFAQ8NHW3 353 aaPredicted RBP3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 RNF217Q8TC41 542 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 ZC3H15Q8WU90 426 aaKnown RBP3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 ZNF296Q8WUU4 475 aaPredicted RBP3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 ZIC5Q96T25 663 aa3.46□□□□□ -1.86
TRAV1-1-201ENST00000542354 CARD10Q9BWT7 1032 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms