RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 ATP8B1O43520 1251 aa7□□□□□ -1.29
PTPRD-214ENST00000540109 PPFIA3O75145 1194 aa7□□□□□ -1.29
PTPRD-214ENST00000540109 ATP6V1AP38606 617 aa7□□□□□ -1.29
PTPRD-214ENST00000540109 COL22A1Q8NFW1 1626 aaPredicted RBP7□□□□□ -1.29
PTPRD-214ENST00000540109 TNS2Q63HR2 1409 aa7□□□□□ -1.29
PTPRD-214ENST00000540109 URI1O94763 535 aaPredicted RBP7□□□□□ -1.29
PTPRD-214ENST00000540109 DNAJC21Q5F1R6 531 aaKnown RBP7□□□□□ -1.29
PTPRD-214ENST00000540109 CEP135Q66GS9 1140 aa7□□□□□ -1.29
PTPRD-214ENST00000540109 ATG3Q9NT62 314 aa7□□□□□ -1.29
PTPRD-214ENST00000540109 SMC3Q9UQE7 1217 aa7□□□□□ -1.29
PTPRD-214ENST00000540109 TMED8Q6PL24 325 aaPredicted RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 KIF2CQ99661 725 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 MKRN1Q9UHC7 482 aaKnown RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 STRCQ7RTU9 1775 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 AHDC1Q5TGY3 1603 aaPredicted RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 SF3B2Q13435 895 aaKnown RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 ANKRD13DQ6ZTN6 518 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 NUP133Q8WUM0 1156 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 COPRSQ9NQ92 184 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 SMARCA5O60264 1052 aaPredicted RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 IRX5P78411 483 aaPredicted RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 AP1ARQ63HQ0 302 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 POTEDQ86YR6 584 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 ZNF397Q8NF99 534 aaPredicted RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 ZSCAN31Q96LW9 406 aaPredicted RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 ERLIN2O94905 339 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 TOM1L2Q6ZVM7 507 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 C17orf53Q8N3J3 647 aaPredicted RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 NECTIN2Q92692 538 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 TM6SF1Q9BZW5 370 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 SWAP70Q9UH65 585 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 NOL7Q9UMY1 257 aaKnown RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 KIF1CO43896 1103 aaKnown RBP6.99□□□□□ -1.29
PTPRD-214ENST00000540109 C5P01031 1676 aa6.99□□□□□ -1.29
PTPRD-214ENST00000540109 FOSBP53539 338 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 GCKRQ14397 625 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 NEURL1BA8MQ27 555 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 PSMA5P28066 241 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 CCDC97Q96F63 343 aaPredicted RBP6.98□□□□□ -1.29
PTPRD-214ENST00000540109 HMG20BQ9P0W2 317 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 AK9Q5TCS8 1911 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 BIRC2Q13490 618 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 SNRKQ9NRH2 765 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 ABCC12Q96J65 1359 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 RIOK3O14730 519 aaKnown RBP6.98□□□□□ -1.29
PTPRD-214ENST00000540109 SGSM2O43147 1006 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 CLNS1AP54105 237 aaKnown RBP6.98□□□□□ -1.29
PTPRD-214ENST00000540109 E2F4Q16254 413 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 RABL6Q3YEC7 729 aaPredicted RBP6.98□□□□□ -1.29
PTPRD-214ENST00000540109 PPM1EQ8WY54 764 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 RBM33Q96EV2 1170 aaKnown RBP6.98□□□□□ -1.29
PTPRD-214ENST00000540109 SUDS3Q9H7L9 328 aaPredicted RBP6.98□□□□□ -1.29
PTPRD-214ENST00000540109 ANO2Q9NQ90 1003 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 SMTNL1A8MU46 457 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 HSPA4P34932 840 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 ANKRD1Q15327 319 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 C16orf71Q8IYS4 520 aaPredicted RBP6.98□□□□□ -1.29
PTPRD-214ENST00000540109 BCL2L12Q9HB09 334 aa6.98□□□□□ -1.29
PTPRD-214ENST00000540109 ATP2C2O75185 946 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 NBPF7P0C2Y1 421 aaPredicted RBP6.97□□□□□ -1.29
PTPRD-214ENST00000540109 KRT32Q14532 448 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 PDIA6Q15084 440 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 SH2B1Q9NRF2 756 aaPredicted RBP6.97□□□□□ -1.29
PTPRD-214ENST00000540109 SPEF2Q9C093 1822 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 KIF4AO95239 1232 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 EVA1CP58658 441 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 PI4K2BQ8TCG2 481 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 XAGE3Q8WTP9 111 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 SMARCC1Q92922 1105 aaPredicted RBP6.97□□□□□ -1.29
PTPRD-214ENST00000540109 ARFGEF2Q9Y6D5 1785 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 CYP27B1O15528 508 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 EZRP15311 586 aaKnown RBP6.97□□□□□ -1.29
PTPRD-214ENST00000540109 JMYQ8N9B5 988 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 NFATC2IPQ8NCF5 419 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 SCLT1Q96NL6 688 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 KCNQ3O43525 872 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 NEK4P51957 841 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 OTUD7AQ8TE49 926 aaPredicted RBP6.97□□□□□ -1.29
PTPRD-214ENST00000540109 ZNF496Q96IT1 587 aaPredicted RBP6.97□□□□□ -1.29
PTPRD-214ENST00000540109 PRIM1P49642 420 aaKnown RBP6.97□□□□□ -1.29
PTPRD-214ENST00000540109 CUL4AQ13619 759 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 CEP89Q96ST8 783 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 CWC25Q9NXE8 425 aaPredicted RBP6.97□□□□□ -1.29
PTPRD-214ENST00000540109 VPS18Q9P253 973 aa6.97□□□□□ -1.29
PTPRD-214ENST00000540109 CIAO1O76071 339 aa6.96□□□□□ -1.29
PTPRD-214ENST00000540109 CAMK4Q16566 473 aa6.96□□□□□ -1.29
PTPRD-214ENST00000540109 DZIP1Q86YF9 867 aaKnown RBP6.96□□□□□ -1.29
PTPRD-214ENST00000540109 NEK11Q8NG66 645 aa6.96□□□□□ -1.29
PTPRD-214ENST00000540109 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.96□□□□□ -1.29
PTPRD-214ENST00000540109 TNMDQ9H2S6 317 aa6.96□□□□□ -1.29
PTPRD-214ENST00000540109 ERCC3P19447 782 aa6.96□□□□□ -1.29
PTPRD-214ENST00000540109 GCKP35557 465 aa6.96□□□□□ -1.29
PTPRD-214ENST00000540109 TRIM28Q13263 835 aaKnown RBP6.96□□□□□ -1.29
PTPRD-214ENST00000540109 KCNB2Q92953 911 aa6.96□□□□□ -1.29
PTPRD-214ENST00000540109 ALDH8A1Q9H2A2 487 aaPredicted RBP6.96□□□□□ -1.29
PTPRD-214ENST00000540109 ZNF500O60304 480 aaPredicted RBP6.96□□□□□ -1.3
PTPRD-214ENST00000540109 STARD3NLO95772 234 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 SLMAPQ14BN4 828 aa6.96□□□□□ -1.3
PTPRD-214ENST00000540109 CRACR2AQ9BSW2 395 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms