RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 DPCR1Q3MIW9 517 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 LEKR1Q6ZMV7 388 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 PLCD3Q8N3E9 789 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 ALKQ9UM73 1620 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 RNMTO43148 476 aaKnown RBP14.98□□□□□ -0.01
MSH6-210ENST00000540021 KCNG4Q8TDN1 519 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 PCMTD1Q96MG8 357 aaPredicted RBP14.98□□□□□ -0.01
MSH6-210ENST00000540021 FUCA2Q9BTY2 467 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 NDUFA8P51970 172 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 EVCP57679 992 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 KMT5BQ4FZB7 885 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 MRFAP1L1Q96HT8 127 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 PRC1O43663 620 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 KIF4BQ2VIQ3 1234 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 PCDHA7Q9UN72 937 aa14.98□□□□□ -0.01
MSH6-210ENST00000540021 TNRQ92752 1358 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 FANCCQ00597 558 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 COL9A3Q14050 684 aaPredicted RBP14.97□□□□□ -0.01
MSH6-210ENST00000540021 LZTFL1Q9NQ48 299 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 GJB4Q9NTQ9 266 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 SETD1BQ9UPS6 1966 aaKnown RBP14.97□□□□□ -0.01
MSH6-210ENST00000540021 FAM193AP78312 1265 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 RESTQ13127 1097 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 TSR1Q2NL82 804 aaKnown RBP14.97□□□□□ -0.01
MSH6-210ENST00000540021 PLA2G4DQ86XP0 818 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 CWC15Q9P013 229 aaKnown RBP14.97□□□□□ -0.01
MSH6-210ENST00000540021 DBNLQ9UJU6 430 aaKnown RBP14.97□□□□□ -0.01
MSH6-210ENST00000540021 VWDEQ8N2E2 1590 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 ARAP3Q8WWN8 1544 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 ZNF202O95125 648 aa14.97□□□□□ -0.01
MSH6-210ENST00000540021 ZNF594Q96JF6 807 aaPredicted RBP14.97□□□□□ -0.01
MSH6-210ENST00000540021 DDX21Q9NR30 783 aaKnown RBP eCLIP14.97□□□□□ -0.01
MSH6-210ENST00000540021 PUF60Q9UHX1 559 aaKnown RBP14.97□□□□□ -0.01
MSH6-210ENST00000540021 DDX41Q9UJV9 622 aaKnown RBP14.97□□□□□ -0.01
MSH6-210ENST00000540021 KIDINS220Q9ULH0 1771 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 REREQ9P2R6 1566 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 GIGYF1O75420 1035 aaPredicted RBP14.96□□□□□ -0.01
MSH6-210ENST00000540021 NEK11Q8NG66 645 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 ALG1Q9BT22 464 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 PHACTR2O75167 634 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 KCNA6P17658 529 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 KCNH5Q8NCM2 988 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 ANKRD7Q92527 254 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 GPHNQ9NQX3 736 aaPredicted RBP14.96□□□□□ -0.01
MSH6-210ENST00000540021 MTMR7Q9Y216 660 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 HECW2Q9P2P5 1572 aa14.96□□□□□ -0.01
MSH6-210ENST00000540021 LMTK2Q8IWU2 1503 aa14.96□□□□□ -0.02
MSH6-210ENST00000540021 ERICH2A1L162 156 aa14.96□□□□□ -0.02
MSH6-210ENST00000540021 THEMISQ8N1K5 641 aaPredicted RBP14.96□□□□□ -0.02
MSH6-210ENST00000540021 GOLPH3LQ9H4A5 285 aa14.96□□□□□ -0.02
MSH6-210ENST00000540021 CNNM1Q9NRU3 951 aa14.96□□□□□ -0.02
MSH6-210ENST00000540021 CLIC4Q9Y696 253 aa14.96□□□□□ -0.02
MSH6-210ENST00000540021 SEC31AO94979 1220 aaKnown RBP14.95□□□□□ -0.02
MSH6-210ENST00000540021 ARFGAP3Q9NP61 516 aa14.95□□□□□ -0.02
MSH6-210ENST00000540021 DEPDC5O75140 1603 aa14.95□□□□□ -0.02
MSH6-210ENST00000540021 CCDC102BQ68D86 513 aa14.95□□□□□ -0.02
MSH6-210ENST00000540021 KIAA1468Q9P260 1216 aa14.95□□□□□ -0.02
MSH6-210ENST00000540021 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.95□□□□□ -0.023e-7■■■□□ 17.8
MSH6-210ENST00000540021 USP6P35125 1406 aa14.95□□□□□ -0.02
MSH6-210ENST00000540021 PPLO60437 1756 aa14.95□□□□□ -0.02
MSH6-210ENST00000540021 ARHGEF28Q8N1W1 1705 aaKnown RBP14.95□□□□□ -0.02
MSH6-210ENST00000540021 METAP2P50579 478 aaKnown RBP eCLIP14.94□□□□□ -0.02
MSH6-210ENST00000540021 GCKRQ14397 625 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 TCHHQ07283 1943 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 E7EWF7 191 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 STX17P56962 302 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 ST3GAL1Q11201 340 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 JAKMIP3Q5VZ66 844 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 NSUN7Q8NE18 718 aaKnown RBP14.94□□□□□ -0.02
MSH6-210ENST00000540021 PPP1R13BQ96KQ4 1090 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 SLC26A6Q9BXS9 759 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 MROH1Q8NDA8 1641 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 FILIP1LQ4L180 1135 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 IP6K1Q92551 441 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 USP32Q8NFA0 1604 aa14.94□□□□□ -0.02
MSH6-210ENST00000540021 NAA16Q6N069 864 aaPredicted RBP14.93□□□□□ -0.02
MSH6-210ENST00000540021 CAGE1Q8TC20 777 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 TRIM34Q9BYJ4 488 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 EPC1Q9H2F5 836 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 TERF2Q15554 542 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 ANKRD20A12PQ8NF67 263 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 NCOA7Q8NI08 942 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 CDKL5O76039 1030 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 ATP1A3P13637 1013 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 IARSP41252 1262 aaKnown RBP14.93□□□□□ -0.02
MSH6-210ENST00000540021 DHX8Q14562 1220 aaKnown RBP14.93□□□□□ -0.02
MSH6-210ENST00000540021 C10orf67Q8IYJ2 551 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 TBC1D2BQ9UPU7 963 aa14.93□□□□□ -0.02
MSH6-210ENST00000540021 GOLGA8AA7E2F4 631 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 CTIFO43310 598 aaKnown RBP14.92□□□□□ -0.02
MSH6-210ENST00000540021 AFMP43652 599 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 PNOCQ13519 176 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 TRIM22Q8IYM9 498 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 KBTBD3Q8NAB2 608 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 PHKBQ93100 1093 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 DESI2Q9BSY9 194 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 MYL5Q02045 173 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 METTL24Q5JXM2 366 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 EPHA10Q5JZY3 1008 aa14.92□□□□□ -0.02
MSH6-210ENST00000540021 KRBA2Q6ZNG9 492 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms