RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 CCDC152Q4G0S7 254 aa24.59■■□□□ 1.53
SMPDL3A-203ENST00000539041 M0R2C6 588 aa24.58■■□□□ 1.53
SMPDL3A-203ENST00000539041 COL9A3Q14050 684 aaPredicted RBP24.58■■□□□ 1.53
SMPDL3A-203ENST00000539041 TPCN1Q9ULQ1 816 aa24.58■■□□□ 1.53
SMPDL3A-203ENST00000539041 TAF1P21675 1872 aa24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 FSD2A1L4K1 749 aa24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 GOLGA6L3A6NEY3 463 aa24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 MCAMP43121 646 aa24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 PUM3Q15397 648 aaKnown RBP24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 RGL2O15211 777 aa24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 HSPD1P10809 573 aaKnown RBP24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 FGFR2P21802 821 aa24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 ST3GAL1Q11201 340 aa24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 TOB2Q14106 344 aaPredicted RBP24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 LPIN2Q92539 896 aa24.57■■□□□ 1.52
SMPDL3A-203ENST00000539041 OSBP2Q969R2 916 aa24.56■■□□□ 1.52
SMPDL3A-203ENST00000539041 TCEANC2Q96MN5 208 aa24.56■■□□□ 1.52
SMPDL3A-203ENST00000539041 MPHOSPH8Q99549 860 aa24.56■■□□□ 1.52
SMPDL3A-203ENST00000539041 UQCRFS1P1P0C7P4 283 aa24.55■■□□□ 1.52
SMPDL3A-203ENST00000539041 ARID4AP29374 1257 aaPredicted RBP24.55■■□□□ 1.52
SMPDL3A-203ENST00000539041 APPBP2Q92624 585 aa24.55■■□□□ 1.52
SMPDL3A-203ENST00000539041 SEC31BQ9NQW1 1179 aa24.55■■□□□ 1.52
SMPDL3A-203ENST00000539041 PRPF40AO75400 957 aaKnown RBP24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 SLC5A1P13866 664 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 GJB2P29033 226 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 TTF1Q15361 905 aaPredicted RBP24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 RC3H1Q5TC82 1133 aaKnown RBP24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 PI16Q6UXB8 463 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 PTF1AQ7RTS3 328 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 C4AP0C0L4 1744 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 C4BP0C0L5 1744 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 STX6O43752 255 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 IGHMBP2P38935 993 aaKnown RBP24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 WASHC4Q2M389 1173 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 CCDC102BQ68D86 513 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 ZSCAN25Q6NSZ9 544 aa24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 ISY1Q9ULR0 285 aaKnown RBP24.54■■□□□ 1.52
SMPDL3A-203ENST00000539041 HMGB1P09429 215 aaKnown RBP24.53■■□□□ 1.52
SMPDL3A-203ENST00000539041 ZSCAN22P10073 491 aaPredicted RBP24.53■■□□□ 1.52
SMPDL3A-203ENST00000539041 SYT1P21579 422 aa24.53■■□□□ 1.52
SMPDL3A-203ENST00000539041 NECAB1Q8N987 351 aa24.53■■□□□ 1.52
SMPDL3A-203ENST00000539041 HELBQ8NG08 1087 aaPredicted RBP24.53■■□□□ 1.52
SMPDL3A-203ENST00000539041 CHD4Q14839 1912 aa24.53■■□□□ 1.52
SMPDL3A-203ENST00000539041 PHKA1P46020 1223 aa24.52■■□□□ 1.52
SMPDL3A-203ENST00000539041 KCNQ4P56696 695 aa24.52■■□□□ 1.52
SMPDL3A-203ENST00000539041 MEX3CQ5U5Q3 659 aaKnown RBP24.52■■□□□ 1.52
SMPDL3A-203ENST00000539041 STOX1Q6ZVD7 989 aa24.52■■□□□ 1.52
SMPDL3A-203ENST00000539041 CHAMP1Q96JM3 812 aa24.52■■□□□ 1.52
SMPDL3A-203ENST00000539041 ATRNO75882 1429 aa24.52■■□□□ 1.52
SMPDL3A-203ENST00000539041 COL4A1P02462 1669 aa24.52■■□□□ 1.52
SMPDL3A-203ENST00000539041 RPS6KA4O75676 772 aa24.5■■□□□ 1.51
SMPDL3A-203ENST00000539041 Q6ZUG5 572 aa24.5■■□□□ 1.51
SMPDL3A-203ENST00000539041 CERKQ8TCT0 537 aa24.5■■□□□ 1.51
SMPDL3A-203ENST00000539041 GJD4Q96KN9 370 aaPredicted RBP24.5■■□□□ 1.51
SMPDL3A-203ENST00000539041 ADD2P35612 726 aa24.49■■□□□ 1.51
SMPDL3A-203ENST00000539041 CTNNA3Q9UI47 895 aa24.49■■□□□ 1.51
SMPDL3A-203ENST00000539041 MYH13Q9UKX3 1938 aa24.49■■□□□ 1.51
SMPDL3A-203ENST00000539041 ERFEQ4G0M1 354 aa24.49■■□□□ 1.51
SMPDL3A-203ENST00000539041 CDC5LQ99459 802 aaKnown RBP24.49■■□□□ 1.51
SMPDL3A-203ENST00000539041 NARFQ9UHQ1 456 aa24.49■■□□□ 1.51
SMPDL3A-203ENST00000539041 E7EWF7 191 aa24.48■■□□□ 1.51
SMPDL3A-203ENST00000539041 F13A1P00488 732 aa24.48■■□□□ 1.51
SMPDL3A-203ENST00000539041 PDIA4P13667 645 aaKnown RBP24.48■■□□□ 1.51
SMPDL3A-203ENST00000539041 NCLP19338 710 aaKnown RBP24.48■■□□□ 1.51
SMPDL3A-203ENST00000539041 DHX32Q7L7V1 743 aaKnown RBP24.48■■□□□ 1.51
SMPDL3A-203ENST00000539041 PUS7LQ9H0K6 701 aaKnown RBP24.48■■□□□ 1.51
SMPDL3A-203ENST00000539041 PIH1D3Q9NQM4 214 aaKnown RBP24.48■■□□□ 1.51
SMPDL3A-203ENST00000539041 CCNL1Q9UK58 526 aaPredicted RBP24.48■■□□□ 1.51
SMPDL3A-203ENST00000539041 AFF2P51816 1311 aa24.48■■□□□ 1.51
SMPDL3A-203ENST00000539041 BCL2L12Q9HB09 334 aa24.47■■□□□ 1.51
SMPDL3A-203ENST00000539041 SF3B3Q15393 1217 aaKnown RBP24.47■■□□□ 1.51
SMPDL3A-203ENST00000539041 GPT2Q8TD30 523 aa24.47■■□□□ 1.51
SMPDL3A-203ENST00000539041 MYH15Q9Y2K3 1946 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 A0A0G2JLW4 131 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 FOXP2O15409 715 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 GPAA1O43292 621 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 MBD3O95983 291 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 MRE11P49959 708 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 UBE3CQ15386 1083 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 FAM182BQ5T319 152 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 TBC1D9BQ66K14 1250 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 MTMR6Q9Y217 621 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 ATP6V1DQ9Y5K8 247 aa24.46■■□□□ 1.51
SMPDL3A-203ENST00000539041 EXOSC10Q01780 885 aaKnown RBP24.45■■□□□ 1.5
SMPDL3A-203ENST00000539041 CHRNDQ07001 517 aa24.45■■□□□ 1.5
SMPDL3A-203ENST00000539041 IMMTQ16891 758 aaKnown RBP24.45■■□□□ 1.5
SMPDL3A-203ENST00000539041 SLC9C2Q5TAH2 1124 aa24.45■■□□□ 1.5
SMPDL3A-203ENST00000539041 CAVIN1Q6NZI2 390 aaKnown RBP24.45■■□□□ 1.5
SMPDL3A-203ENST00000539041 GTF3C6Q969F1 213 aa24.45■■□□□ 1.5
SMPDL3A-203ENST00000539041 GNPATO15228 680 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 IDH1O75874 414 aaKnown RBP24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 FGD1P98174 961 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 STK3Q13188 491 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 TTLL5Q6EMB2 1281 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 BICDL1Q6ZP65 573 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 SPATA5Q8NB90 893 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 NYXQ9GZU5 481 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 PDCP20941 246 aa24.44■■□□□ 1.5
SMPDL3A-203ENST00000539041 SLC10A5Q5PT55 438 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms