RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 PIK3C2AO00443 1686 aa4.38□□□□□ -1.71
MCF2-210ENST00000536274 SPATA31A5Q5VU36 1347 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 SPATA31A7Q8IWB4 1347 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 SYCP1Q15431 976 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 NBPF20Q3BBV1 942 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 TSHZ3Q63HK5 1081 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 DNAAF4Q8WXU2 420 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 C8orf37Q96NL8 207 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 C14orf93Q9H972 538 aaKnown RBP4.37□□□□□ -1.71
MCF2-210ENST00000536274 NOB1Q9ULX3 412 aaKnown RBP4.37□□□□□ -1.71
MCF2-210ENST00000536274 PAXBP1Q9Y5B6 917 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 ANKRD36BQ8N2N9 1353 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 TBC1D8O95759 1140 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 SF3B2Q13435 895 aaKnown RBP4.37□□□□□ -1.71
MCF2-210ENST00000536274 CCDC183Q5T5S1 534 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 KCNV1Q6PIU1 500 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 ERO1AQ96HE7 468 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 FAXDC2Q96IV6 333 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 SRCIN1Q9C0H9 1055 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 CD248Q9HCU0 757 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 GPHNQ9NQX3 736 aaPredicted RBP4.37□□□□□ -1.71
MCF2-210ENST00000536274 KNSTRNQ9Y448 316 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 KIF3CO14782 793 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 ZRANB2O95218 330 aaKnown RBP eCLIP4.37□□□□□ -1.71
MCF2-210ENST00000536274 BRD1O95696 1058 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 MX1P20591 662 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 MCCP23508 829 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 ACTN2P35609 894 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 CCNHP51946 323 aaPredicted RBP4.37□□□□□ -1.71
MCF2-210ENST00000536274 PPARDQ03181 441 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 UVSSAQ2YD98 709 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 TMCO3Q6UWJ1 677 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 GOLGA5Q8TBA6 731 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 SYAP1Q96A49 352 aaPredicted RBP4.37□□□□□ -1.71
MCF2-210ENST00000536274 CLIC6Q96NY7 704 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 CLIP2Q9UDT6 1046 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 PALD1Q9ULE6 856 aa4.37□□□□□ -1.71
MCF2-210ENST00000536274 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.37□□□□□ -1.71
MCF2-210ENST00000536274 H0YHG0 523 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 TPM4P67936 248 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 SARNPP82979 210 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 GNL2Q13823 731 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 RABEP1Q15276 862 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 ZKSCAN2Q63HK3 967 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 MMS22LQ6ZRQ5 1243 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 ARHGEF1Q92888 912 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 ERCC4Q92889 916 aaPredicted RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 FUCA2Q9BTY2 467 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 CDCA7Q9BWT1 371 aaPredicted RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 KDM4CQ9H3R0 1056 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 ZSCAN16Q9H4T2 348 aaPredicted RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 CWC15Q9P013 229 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.36□□□□□ -1.71
MCF2-210ENST00000536274 RPS6KL1Q9Y6S9 549 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 LY75O60449 1722 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 PPP1R12AO14974 1030 aaPredicted RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 FANCGO15287 622 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 IPO8O15397 1037 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 MYBL1P10243 752 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 SKILP12757 684 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 HNRNPH1P31943 449 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 PEX19P40855 299 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 FOXK1P85037 733 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 EXOSC9Q06265 439 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 MCM6Q14566 821 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 ANO6Q4KMQ2 910 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 BMP2KLQ5H9B9 411 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 LRRC31Q6UY01 552 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 KRT27Q7Z3Y8 459 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 CCAR2Q8N163 923 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 CCDC82Q8N4S0 544 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 SSH1Q8WYL5 1049 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 SSH2Q76I76 1423 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 NUTM2BA6NNL0 878 aaPredicted RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 NUTM2EB1AL46 878 aaPredicted RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 GOLGA8FQ08AF8 430 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 GOLGA8DPQ0D2H9 430 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 PSMD2Q13200 908 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 NOM1Q5C9Z4 860 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 ZC3H12AQ5D1E8 599 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 IFFO2Q5TF58 517 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 NUTM2DQ5VT03 806 aaPredicted RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 CCDC30Q5VVM6 783 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 NUTM2AQ8IVF1 878 aaPredicted RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 TCP11L2Q8N4U5 519 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 FAM184AQ8NB25 1140 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 DDX54Q8TDD1 881 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 PTCD2Q8WV60 388 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 MARVELD3Q96A59 401 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 CARD6Q9BX69 1037 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 EHD4Q9H223 541 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 BICC1Q9H694 974 aaKnown RBP4.36□□□□□ -1.71
MCF2-210ENST00000536274 CBX8Q9HC52 389 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 PDE11AQ9HCR9 933 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 PCDHGA4Q9Y5G9 962 aa4.36□□□□□ -1.71
MCF2-210ENST00000536274 GPRASP1Q5JY77 1395 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 OVOS2A0A0G2JMS6 1433 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 OVOS2A0A0J9YW53 1432 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 OVOS2Q6IE36 1432 aa4.35□□□□□ -1.71
MCF2-210ENST00000536274 C2orf72A6NCS6 295 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms