RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	SALL4	Q9UJQ4	1053 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	DCTN4	Q9UJW0	460 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	TRIM33	Q9UPN9	1127 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	IVNS1ABP	Q9Y6Y0	642 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	PDE2A	O00408	941 aa	Predicted RBP	5.14	□□□□□ -1.59
CD44-238	ENST00000534296	EREG	O14944	169 aa		5.14	□□□□□ -1.59
CD44-238	ENST00000534296	MAPK1	P28482	360 aa		5.14	□□□□□ -1.59
CD44-238	ENST00000534296	ARL4D	P49703	201 aa		5.14	□□□□□ -1.59
CD44-238	ENST00000534296	GRIK4	Q16099	956 aa		5.14	□□□□□ -1.59
CD44-238	ENST00000534296	IGF2-AS	Q6U949	168 aa		5.14	□□□□□ -1.59
CD44-238	ENST00000534296	LENG1	Q96BZ8	264 aa	Predicted RBP	5.14	□□□□□ -1.59
CD44-238	ENST00000534296	OSMR	Q99650	979 aa		5.14	□□□□□ -1.59
CD44-238	ENST00000534296	CHRD	Q9H2X0	955 aa		5.14	□□□□□ -1.59
CD44-238	ENST00000534296	ZFYVE28	Q9HCC9	887 aa		5.14	□□□□□ -1.59
CD44-238	ENST00000534296	FOXD3	Q9UJU5	478 aa	Predicted RBP	5.14	□□□□□ -1.59
CD44-238	ENST00000534296		H3BRJ5	948 aa		5.13	□□□□□ -1.59
CD44-238	ENST00000534296	CPNE3	O75131	537 aa	Known RBP	5.13	□□□□□ -1.59
CD44-238	ENST00000534296	CHRNA4	P43681	627 aa		5.13	□□□□□ -1.59
CD44-238	ENST00000534296	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	5.13	□□□□□ -1.59
CD44-238	ENST00000534296	TMEM102	Q8N9M5	508 aa	Predicted RBP	5.13	□□□□□ -1.59
CD44-238	ENST00000534296	KLHL23	Q8NBE8	558 aa		5.13	□□□□□ -1.59
CD44-238	ENST00000534296	WNT8B	Q93098	351 aa		5.13	□□□□□ -1.59
CD44-238	ENST00000534296	FAM129B	Q96TA1	746 aa		5.13	□□□□□ -1.59
CD44-238	ENST00000534296	RBCK1	Q9BYM8	510 aa		5.13	□□□□□ -1.59
CD44-238	ENST00000534296	MRPL18	Q9H0U6	180 aa	Known RBP	5.13	□□□□□ -1.59
CD44-238	ENST00000534296	DNAJC25	Q9H1X3	360 aa		5.13	□□□□□ -1.59
CD44-238	ENST00000534296	DZANK1	Q9NVP4	752 aa		5.13	□□□□□ -1.59
CD44-238	ENST00000534296	PIP4K2B	P78356	416 aa		5.12	□□□□□ -1.59
CD44-238	ENST00000534296	TXNRD3	Q86VQ6	643 aa		5.12	□□□□□ -1.59
CD44-238	ENST00000534296	BSND	Q8WZ55	320 aa		5.12	□□□□□ -1.59
CD44-238	ENST00000534296	LINC01387	J3KSC0	135 aa		5.11	□□□□□ -1.59
CD44-238	ENST00000534296	PROC	P04070	461 aa		5.11	□□□□□ -1.59
CD44-238	ENST00000534296	BAG6	P46379	1132 aa		5.11	□□□□□ -1.59
CD44-238	ENST00000534296	MBTPS1	Q14703	1052 aa		5.11	□□□□□ -1.59
CD44-238	ENST00000534296	AEBP1	Q8IUX7	1158 aa		5.11	□□□□□ -1.59
CD44-238	ENST00000534296	DDX54	Q8TDD1	881 aa	Known RBP	5.11	□□□□□ -1.59
CD44-238	ENST00000534296	ASAP3	Q8TDY4	903 aa		5.11	□□□□□ -1.59
CD44-238	ENST00000534296	ALKBH8	Q96BT7	664 aa	Known RBP	5.11	□□□□□ -1.59
CD44-238	ENST00000534296	POP1	Q99575	1024 aa	Known RBP	5.11	□□□□□ -1.59
CD44-238	ENST00000534296	ZKSCAN3	Q9BRR0	538 aa		5.11	□□□□□ -1.59
CD44-238	ENST00000534296	ADAM19	Q9H013	955 aa		5.11	□□□□□ -1.59
CD44-238	ENST00000534296	SEC31B	Q9NQW1	1179 aa		5.11	□□□□□ -1.59
CD44-238	ENST00000534296	DLL1	O00548	723 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	FSCN2	O14926	492 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	SELP	P16109	830 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	CDC25B	P30305	580 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	CD68	P34810	354 aa	Predicted RBP	5.1	□□□□□ -1.59
CD44-238	ENST00000534296	ADGRE1	Q14246	886 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	SETDB1	Q15047	1291 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	ECM1	Q16610	540 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	SHISA2	Q6UWI4	295 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	GALNT12	Q8IXK2	581 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	BHLHE41	Q9C0J9	482 aa	Predicted RBP	5.1	□□□□□ -1.59
CD44-238	ENST00000534296	NIF3L1	Q9GZT8	377 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	EHD4	Q9H223	541 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	LIN7B	Q9HAP6	207 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	OSGEP	Q9NPF4	335 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	NLRP2	Q9NX02	1062 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	PPP4R2	Q9NY27	417 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	TRAK1	Q9UPV9	953 aa		5.1	□□□□□ -1.59
CD44-238	ENST00000534296	EIF1AY	O14602	144 aa	Known RBP	5.09	□□□□□ -1.59
CD44-238	ENST00000534296	GADD45B	O75293	160 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-238	ENST00000534296	DEAF1	O75398	565 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-238	ENST00000534296	POLR3D	P05423	398 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-238	ENST00000534296	ACPP	P15309	386 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	EPHA1	P21709	976 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	HNRNPU	Q00839	825 aa	Known RBP eCLIP	5.09	□□□□□ -1.59
CD44-238	ENST00000534296	ATP2B2	Q01814	1243 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	IKBKE	Q14164	716 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	TXNDC11	Q6PKC3	985 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	ILDR2	Q71H61	639 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	TMC7	Q7Z402	723 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	SLC7A3	Q8WY07	619 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	NXPE3	Q969Y0	559 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	AKTIP	Q9H8T0	292 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	ZFYVE1	Q9HBF4	777 aa		5.09	□□□□□ -1.59
CD44-238	ENST00000534296	SH2B1	Q9NRF2	756 aa	Predicted RBP	5.09	□□□□□ -1.59
CD44-238	ENST00000534296		K7ELQ4	463 aa	Predicted RBP	5.08	□□□□□ -1.6
CD44-238	ENST00000534296	NFKBIE	O00221	500 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	GPR182	O15218	404 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	ITGB2	P05107	769 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	FGD1	P98174	961 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	PLCB3	Q01970	1234 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	C19orf57	Q0VDD7	668 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	ORC1	Q13415	861 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	5.08	□□□□□ -1.6
CD44-238	ENST00000534296	ACAD11	Q709F0	780 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	CCDC74A	Q96AQ1	378 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	CSRNP1	Q96S65	589 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	CARD10	Q9BWT7	1032 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	CEP41	Q9BYV8	373 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	NPHS2	Q9NP85	383 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296	SOX13	Q9UN79	622 aa		5.08	□□□□□ -1.6
CD44-238	ENST00000534296		A0A1W2PP55	124 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296	TRPA1	O75762	1119 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296	GLB1	P16278	677 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296	IREB2	P48200	963 aa	Known RBP	5.07	□□□□□ -1.6
CD44-238	ENST00000534296	DOC2B	Q14184	412 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296	DUOXA2	Q1HG44	320 aa		5.07	□□□□□ -1.6
CD44-238	ENST00000534296	KIAA0319	Q5VV43	1072 aa		5.07	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms