RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 RARSP54136 660 aaKnown RBP11.8□□□□□ -0.52
HDAC3-215ENST00000519474 DEFB115Q30KQ5 88 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 DLK2Q6UY11 383 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 LDHAL6AQ6ZMR3 332 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 USP17L1Q7RTZ2 530 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 USP48Q86UV5 1035 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 GLIS2Q9BZE0 524 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-215ENST00000519474 PUS3Q9BZE2 481 aaKnown RBP11.8□□□□□ -0.52
HDAC3-215ENST00000519474 SMC4Q9NTJ3 1288 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 RIPOR2Q9Y4F9 1068 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 IRS2Q9Y4H2 1338 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 MYH3P11055 1940 aa11.8□□□□□ -0.52
HDAC3-215ENST00000519474 PLIN1O60240 522 aa11.79□□□□□ -0.52
HDAC3-215ENST00000519474 VEGFBP49765 207 aa11.79□□□□□ -0.52
HDAC3-215ENST00000519474 ZNF280AP59817 542 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-215ENST00000519474 RABL6Q3YEC7 729 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-215ENST00000519474 TTLL5Q6EMB2 1281 aa11.79□□□□□ -0.52
HDAC3-215ENST00000519474 C15orf52Q6ZUT6 534 aaKnown RBP11.79□□□□□ -0.52
HDAC3-215ENST00000519474 CDC37L1Q7L3B6 337 aa11.79□□□□□ -0.52
HDAC3-215ENST00000519474 ANKRD44Q8N8A2 993 aa11.79□□□□□ -0.52
HDAC3-215ENST00000519474 MXD3Q9BW11 206 aa11.79□□□□□ -0.52
HDAC3-215ENST00000519474 BICC1Q9H694 974 aaKnown RBP11.79□□□□□ -0.52
HDAC3-215ENST00000519474 SCN9AQ15858 1988 aa11.79□□□□□ -0.52
HDAC3-215ENST00000519474 MED23Q9ULK4 1368 aa11.79□□□□□ -0.52
HDAC3-215ENST00000519474 RASSF10A6NK89 507 aa11.78□□□□□ -0.52
HDAC3-215ENST00000519474 DACT2Q5SW24 774 aa11.78□□□□□ -0.52
HDAC3-215ENST00000519474 STRIP1Q5VSL9 837 aa11.78□□□□□ -0.52
HDAC3-215ENST00000519474 CD209Q9NNX6 404 aa11.78□□□□□ -0.52
HDAC3-215ENST00000519474 USP17L8P0C7I0 530 aa11.77□□□□□ -0.53
HDAC3-215ENST00000519474 SCARF1Q14162 830 aa11.77□□□□□ -0.53
HDAC3-215ENST00000519474 TAF7LQ5H9L4 462 aa11.77□□□□□ -0.53
HDAC3-215ENST00000519474 ARHGAP45Q92619 1136 aa11.77□□□□□ -0.53
HDAC3-215ENST00000519474 CNNM1Q9NRU3 951 aa11.77□□□□□ -0.53
HDAC3-215ENST00000519474 ASTN2O75129 1339 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-215ENST00000519474 CNTNAP1P78357 1384 aa11.77□□□□□ -0.53
HDAC3-215ENST00000519474 POLR2AP24928 1970 aaKnown RBP11.76□□□□□ -0.53
HDAC3-215ENST00000519474 CELF2O95319 508 aaKnown RBP11.76□□□□□ -0.53
HDAC3-215ENST00000519474 KCNJ4P48050 445 aa11.76□□□□□ -0.53
HDAC3-215ENST00000519474 GTF2IP78347 998 aa11.76□□□□□ -0.53
HDAC3-215ENST00000519474 UBE4AQ14139 1066 aa11.76□□□□□ -0.53
HDAC3-215ENST00000519474 KIF4BQ2VIQ3 1234 aa11.76□□□□□ -0.53
HDAC3-215ENST00000519474 LRRC24Q50LG9 513 aa11.76□□□□□ -0.53
HDAC3-215ENST00000519474 DCPSQ96C86 337 aaKnown RBP11.76□□□□□ -0.53
HDAC3-215ENST00000519474 TLL2Q9Y6L7 1015 aa11.76□□□□□ -0.53
HDAC3-215ENST00000519474 BCAR3O75815 825 aa11.75□□□□□ -0.53
HDAC3-215ENST00000519474 IL1R1P14778 569 aa11.75□□□□□ -0.53
HDAC3-215ENST00000519474 RFX5P48382 616 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-215ENST00000519474 HNRNPUQ00839 825 aaKnown RBP eCLIP11.75□□□□□ -0.53
HDAC3-215ENST00000519474 KRT26Q7Z3Y9 468 aa11.75□□□□□ -0.53
HDAC3-215ENST00000519474 KLHDC4Q8TBB5 520 aa11.75□□□□□ -0.53
HDAC3-215ENST00000519474 FAM84BQ96KN1 310 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-215ENST00000519474 API5Q9BZZ5 524 aaKnown RBP11.75□□□□□ -0.53
HDAC3-215ENST00000519474 MYOZ2Q9NPC6 264 aa11.75□□□□□ -0.53
HDAC3-215ENST00000519474 ABT1Q9ULW3 272 aaKnown RBP11.75□□□□□ -0.53
HDAC3-215ENST00000519474 HSPA1AP0DMV8 641 aaKnown RBP11.74□□□□□ -0.53
HDAC3-215ENST00000519474 HSPA1BP0DMV9 641 aaKnown RBP11.74□□□□□ -0.53
HDAC3-215ENST00000519474 NBPF9Q3BBW0 867 aa11.74□□□□□ -0.53
HDAC3-215ENST00000519474 INTS3Q68E01 1043 aaKnown RBP11.74□□□□□ -0.53
HDAC3-215ENST00000519474 SAPCD2Q86UD0 394 aa11.74□□□□□ -0.53
HDAC3-215ENST00000519474 TDRD7Q8NHU6 1098 aaKnown RBP11.74□□□□□ -0.53
HDAC3-215ENST00000519474 FBXW7Q969H0 707 aa11.74□□□□□ -0.53
HDAC3-215ENST00000519474 TNNQ9UQP3 1299 aa11.74□□□□□ -0.53
HDAC3-215ENST00000519474 WDR33Q9C0J8 1336 aaKnown RBP11.74□□□□□ -0.53
HDAC3-215ENST00000519474 ZNF609O15014 1411 aa11.74□□□□□ -0.53
HDAC3-215ENST00000519474 CEP350Q5VT06 3117 aa11.74□□□□□ -0.53
HDAC3-215ENST00000519474 ADM5C9JUS6 153 aa11.73□□□□□ -0.53
HDAC3-215ENST00000519474 SASH1O94885 1247 aa11.73□□□□□ -0.53
HDAC3-215ENST00000519474 PTPN12Q05209 780 aaKnown RBP11.73□□□□□ -0.53
HDAC3-215ENST00000519474 ANGEL2Q5VTE6 544 aaKnown RBP11.73□□□□□ -0.53
HDAC3-215ENST00000519474 FBXO33Q7Z6M2 555 aa11.73□□□□□ -0.53
HDAC3-215ENST00000519474 OGFOD1Q8N543 542 aa11.73□□□□□ -0.53
HDAC3-215ENST00000519474 CERS5Q8N5B7 392 aa11.73□□□□□ -0.53
HDAC3-215ENST00000519474 SPEF2Q9C093 1822 aa11.73□□□□□ -0.53
HDAC3-215ENST00000519474 ZNF408Q9H9D4 720 aa11.73□□□□□ -0.53
HDAC3-215ENST00000519474 WBP1LQ9NX94 342 aa11.73□□□□□ -0.53
HDAC3-215ENST00000519474 MROH5Q6ZUA9 1318 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 WNT10BO00744 389 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 PDE8BO95263 885 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 HIBADHP31937 336 aaKnown RBP11.72□□□□□ -0.53
HDAC3-215ENST00000519474 GYG1P46976 350 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 MMP14P50281 582 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 COL13A1Q5TAT6 717 aaPredicted RBP11.72□□□□□ -0.53
HDAC3-215ENST00000519474 CYP4F22Q6NT55 531 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 ZNF804AQ7Z570 1209 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 KIAA0825Q8IV33 1275 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 VGLL2Q8N8G2 317 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 ZBED3Q96IU2 234 aaPredicted RBP11.72□□□□□ -0.53
HDAC3-215ENST00000519474 CAPNS2Q96L46 248 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 GGA3Q9NZ52 723 aa11.72□□□□□ -0.53
HDAC3-215ENST00000519474 SCAF8Q9UPN6 1271 aaKnown RBP11.72□□□□□ -0.53
HDAC3-215ENST00000519474 MYO3BQ8WXR4 1341 aa11.71□□□□□ -0.53
HDAC3-215ENST00000519474 IPO8O15397 1037 aaKnown RBP11.71□□□□□ -0.53
HDAC3-215ENST00000519474 UBTFL1P0CB47 393 aaPredicted RBP11.71□□□□□ -0.53
HDAC3-215ENST00000519474 FGFR2P21802 821 aa11.71□□□□□ -0.53
HDAC3-215ENST00000519474 FKBP1AP62942 108 aaKnown RBP11.71□□□□□ -0.53
HDAC3-215ENST00000519474 ATG9AQ7Z3C6 839 aa11.71□□□□□ -0.53
HDAC3-215ENST00000519474 SULF1Q8IWU6 871 aa11.71□□□□□ -0.53
HDAC3-215ENST00000519474 HHIPL1Q96JK4 782 aa11.71□□□□□ -0.53
HDAC3-215ENST00000519474 MEIS3Q99687 375 aa11.71□□□□□ -0.53
HDAC3-215ENST00000519474 FAM205AQ6ZU69 1335 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms