RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 MYO19Q96H55 970 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZNF594Q96JF6 807 aaPredicted RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 COX4I2Q96KJ9 171 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM84AQ96KN4 292 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 CCDC85AQ96PX6 553 aaPredicted RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 PUS7Q96PZ0 661 aaKnown RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM83CQ9BQN1 747 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 CORO1BQ9BR76 489 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 C2orf49Q9BVC5 232 aaPredicted RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 RUSC1Q9BVN2 902 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 GSX2Q9BZM3 304 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 SUV39H2Q9H5I1 410 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 SOX17Q9H6I2 414 aaPredicted RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 SSU72Q9NP77 194 aaKnown RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 ABI2Q9NYB9 513 aaPredicted RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 STIM2Q9P246 746 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 PALD1Q9ULE6 856 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TRAK1Q9UPV9 953 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 CDK11AQ9UQ88 783 aaPredicted RBP0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 SLC5A6Q9Y289 635 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 PCDHGA11Q9Y5H2 935 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 HRH3Q9Y5N1 445 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 PARP3Q9Y6F1 533 aa0.9□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM265A0A087WTH1 108 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 MEGF11A6BM72 1044 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 DBX1A6NMT0 343 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 GNAT3A8MTJ3 354 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 KIAA1324LA8MWY0 1029 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 WDR64B1ANS9 1081 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 F8W735 103 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 RFXAPO00287 272 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 DLL1O00548 723 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 C2CD2LO14523 706 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 FSCN2O14926 492 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 NDUFB5O43674 189 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 EIF5BO60841 1220 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 IGSF3O75054 1194 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 PPP1R15AO75807 674 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SASH3O75995 380 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMEM253P0C7T8 217 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 XRCC5P13010 732 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 HOXD8P13378 290 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 FOSL1P15407 271 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SELPP16109 830 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 CDK11BP21127 795 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 ENDOUP21128 410 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 MAP4P27816 1152 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 CANXP27824 592 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 LMOD1P29536 600 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 TXLNAP40222 546 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 RAP1GAPP47736 663 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 CD97P48960 835 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 RBM25P49756 843 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 MFAP1P55081 439 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SFSWAPQ12872 951 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 AP3B2Q13367 1082 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SF3B2Q13435 895 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 DGKZQ13574 1117 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 IKBKEQ14164 716 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 MLECQ14165 292 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 MCM6Q14566 821 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 LRRC14Q15048 493 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 C8orf34Q49A92 452 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 NOM1Q5C9Z4 860 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 CIAPIN1Q6FI81 312 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 MPZL3Q6UWV2 235 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 DBX2Q6ZNG2 339 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 C20orf204Q6ZNR8 217 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 PPP1R3FQ6ZSY5 799 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 KRT25Q7Z3Z0 450 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 PROSER2Q86WR7 435 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 DTX1Q86Y01 620 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 TREML1Q86YW5 311 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SIAH1Q8IUQ4 282 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 AEBP1Q8IUX7 1158 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 ANKMY2Q8IV38 441 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM20CQ8IXL6 584 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 FLCNQ8NFG4 579 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 PI4K2BQ8TCG2 481 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SNX29Q8TEQ0 813 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 BSNDQ8WZ55 320 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 DHX38Q92620 1227 aaKnown RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 MYRFLQ96LU7 910 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 TBC1D32Q96NH3 1257 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 FMNL2Q96PY5 1086 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 CITED4Q96RK1 184 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 OCSTAMPQ9BR26 566 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 EMILIN2Q9BXX0 1053 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 PBX4Q9BYU1 374 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 GZF1Q9H116 711 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 ASCC2Q9H1I8 757 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 TSPAN10Q9H1Z9 355 aaPredicted RBP0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 ATXN3LQ9H3M9 355 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 ALG2Q9H553 416 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SUGCTQ9HAC7 445 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 MKNK2Q9HBH9 465 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 SNRKQ9NRH2 765 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 NLRP2Q9NX02 1062 aa0.89□□□□□ -2.27
RNU4-54P-201ENST00000516428 RAPGEFL1Q9UHV5 662 aa0.89□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms