RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 IFIT1P09914 478 aaKnown RBP13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 CASTP20810 708 aaKnown RBP13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 KCNJ4P48050 445 aa13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 CCDC129Q6ZRS4 1044 aa13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 UTP14AQ9BVJ6 771 aaKnown RBP13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 SH2B1Q9NRF2 756 aaPredicted RBP13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 CNNM1Q9NRU3 951 aa13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 ZNF831Q5JPB2 1677 aa13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 ZSCAN22P10073 491 aaPredicted RBP13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 COL9A3Q14050 684 aaPredicted RBP13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 CREB3L3Q68CJ9 461 aa13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 KCNB2Q92953 911 aa13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 LARP6Q9BRS8 491 aaKnown RBP13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 AKAP2Q9Y2D5 859 aa13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 TAF6LQ9Y6J9 622 aa13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 RFX7Q2KHR2 1363 aa13.1□□□□□ -0.31
SH3RF1-203ENST00000508685 TAF5LO75529 589 aa13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 NTSR2O95665 410 aa13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 FKBP4Q02790 459 aaKnown RBP eCLIP13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 SCARF1Q14162 830 aa13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 CCDC183Q5T5S1 534 aa13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 GORABQ5T7V8 394 aa13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 VPS53Q5VIR6 699 aa13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 FOXD4L5Q5VV16 416 aaPredicted RBP13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 USP48Q86UV5 1035 aa13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 VGLL2Q8N8G2 317 aa13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 FOXD4L4Q8WXT5 416 aaPredicted RBP13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 JAKMIP1Q96N16 626 aaKnown RBP13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 NSFL1CQ9UNZ2 370 aaKnown RBP13.09□□□□□ -0.31
SH3RF1-203ENST00000508685 BCORQ6W2J9 1755 aa13.08□□□□□ -0.31
SH3RF1-203ENST00000508685 NHSQ6T4R5 1651 aa13.08□□□□□ -0.31
SH3RF1-203ENST00000508685 BAG6P46379 1132 aa13.08□□□□□ -0.31
SH3RF1-203ENST00000508685 AK2P54819 239 aa13.08□□□□□ -0.31
SH3RF1-203ENST00000508685 UBE2HP62256 183 aa13.08□□□□□ -0.31
SH3RF1-203ENST00000508685 ATP2B3Q16720 1220 aa13.08□□□□□ -0.31
SH3RF1-203ENST00000508685 PARP10Q53GL7 1025 aa13.08□□□□□ -0.31
SH3RF1-203ENST00000508685 PI16Q6UXB8 463 aa13.08□□□□□ -0.31
SH3RF1-203ENST00000508685 SMC3Q9UQE7 1217 aa13.08□□□□□ -0.31
SH3RF1-203ENST00000508685 DDX60Q8IY21 1712 aaKnown RBP13.08□□□□□ -0.32
SH3RF1-203ENST00000508685 LRP5O75197 1615 aa13.08□□□□□ -0.32
SH3RF1-203ENST00000508685 RPAP1Q9BWH6 1393 aaPredicted RBP13.08□□□□□ -0.32
SH3RF1-203ENST00000508685 SLC27A2O14975 620 aa13.08□□□□□ -0.32
SH3RF1-203ENST00000508685 STX6O43752 255 aa13.08□□□□□ -0.32
SH3RF1-203ENST00000508685 CCDC158Q5M9N0 1113 aa13.08□□□□□ -0.32
SH3RF1-203ENST00000508685 TTC39AQ5SRH9 613 aa13.08□□□□□ -0.32
SH3RF1-203ENST00000508685 DEFB132Q7Z7B7 95 aa13.08□□□□□ -0.32
SH3RF1-203ENST00000508685 SEC31BQ9NQW1 1179 aa13.08□□□□□ -0.32
SH3RF1-203ENST00000508685 ZKSCAN1P17029 563 aaPredicted RBP13.07□□□□□ -0.32
SH3RF1-203ENST00000508685 MCMDC2Q4G0Z9 681 aa13.07□□□□□ -0.32
SH3RF1-203ENST00000508685 AMIGO3Q86WK7 504 aa13.07□□□□□ -0.32
SH3RF1-203ENST00000508685 HELBQ8NG08 1087 aaPredicted RBP13.07□□□□□ -0.32
SH3RF1-203ENST00000508685 ZNF652Q9Y2D9 606 aa13.07□□□□□ -0.32
SH3RF1-203ENST00000508685 CNTNAP4Q9C0A0 1308 aa13.07□□□□□ -0.32
SH3RF1-203ENST00000508685 PDE8BO95263 885 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 RUFY3Q7L099 469 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 AK7Q96M32 723 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 MAP7D2Q96T17 732 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 ZSWIM6Q9HCJ5 1215 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 SNAP23O00161 211 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 APBA3O96018 575 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 F13A1P00488 732 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 PSMA5P28066 241 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 BICDL1Q6ZP65 573 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 PDCL3Q9H2J4 239 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 CCNL1Q9UK58 526 aaPredicted RBP13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 CYP46A1Q9Y6A2 500 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 COL4A1P02462 1669 aa13.06□□□□□ -0.32
SH3RF1-203ENST00000508685 GNPATO15228 680 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 SYT1P21579 422 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 MCAMP43121 646 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 ZAP70P43403 619 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 CLEC4GQ6UXB4 293 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 BCL11BQ9C0K0 894 aaPredicted RBP13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 PDRG1Q9NUG6 133 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 SPEF2Q9C093 1822 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 LARGE1O95461 756 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 PTMAP06454 111 aaKnown RBP13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 EN1Q05925 392 aaPredicted RBP13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 USPL1Q5W0Q7 1092 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 TCEANC2Q96MN5 208 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 ALDH8A1Q9H2A2 487 aaPredicted RBP13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 BCL2L12Q9HB09 334 aa13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 SRP68Q9UHB9 627 aaKnown RBP13.05□□□□□ -0.32
SH3RF1-203ENST00000508685 SCN7AQ01118 1682 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 ANKRD1Q15327 319 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 ERFEQ4G0M1 354 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 CCDC152Q4G0S7 254 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 ZMYM1Q5SVZ6 1142 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 RNF20Q5VTR2 975 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 TBC1D9BQ66K14 1250 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 C3orf67Q6ZVT6 689 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 MTERF4Q7Z6M4 381 aaKnown RBP13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 MPHOSPH8Q99549 860 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 LAMB2P55268 1798 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 MAST3O60307 1309 aa13.04□□□□□ -0.32
SH3RF1-203ENST00000508685 RNF113AO15541 343 aaKnown RBP13.03□□□□□ -0.32
SH3RF1-203ENST00000508685 GADD45BO75293 160 aaPredicted RBP13.03□□□□□ -0.32
SH3RF1-203ENST00000508685 PDCP20941 246 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms