RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 TPM1P09493 284 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 HDGFP51858 240 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 RBM5P52756 815 aaKnown RBP eCLIP8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 FAM160A1Q05DH4 1040 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 HDXQ7Z353 690 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 LTV1Q96GA3 475 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 ZCWPW1Q9H0M4 648 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 BOLA2Q9H3K6 86 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 ARHGEF40Q8TER5 1519 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 A0A0G2JLW4 131 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 ENO4A6NNW6 628 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 TOP1P11387 765 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 ZKSCAN1P17029 563 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 GSDMDP57764 484 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 MAP3K9P80192 1104 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 SMARCC1Q92922 1105 aaPredicted RBP8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 SCLT1Q96NL6 688 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 OSBPL3Q9H4L5 887 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 HDAC6Q9UBN7 1215 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 G3BP2Q9UN86 482 aaKnown RBP8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 MRFAP1Q9Y605 127 aa8.35□□□□□ -1.07
LIMCH1-207ENST00000508466 SHPRHQ149N8 1683 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 PTPRGP23470 1445 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 A0A087WUV0 522 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 CDC25BP30305 580 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 INPP5BP32019 993 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 BLOC1S2Q6QNY1 142 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 SARM1Q6SZW1 724 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 NME9Q86XW9 330 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 GPHNQ9NQX3 736 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 KNDC1Q76NI1 1749 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 MAP2K7O14733 419 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 NRDCO43847 1150 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 AP1G2O75843 785 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 PDHBP11177 359 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 GGCXP38435 758 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 CCNHP51946 323 aaPredicted RBP8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 RSRC2Q7L4I2 434 aaKnown RBP8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 KLHDC4Q8TBB5 520 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 PI4K2BQ8TCG2 481 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 PCDHA7Q9UN72 937 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 CLIC4Q9Y696 253 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 UGGT1Q9NYU2 1555 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 MED14O60244 1454 aa8.34□□□□□ -1.07
LIMCH1-207ENST00000508466 A0A1W2PP64 1363 aa8.34□□□□□ -1.08
LIMCH1-207ENST00000508466 PSDA5PKW4 1024 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 FOXN1O15353 648 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 MYO1BO43795 1136 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 CSB-PGBD3P0DP91 1061 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 MATR3P43243 847 aaKnown RBP eCLIP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 NMIQ13287 307 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 PNOCQ13519 176 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 TOB2Q14106 344 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 NAA25Q14CX7 972 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 NCBP3Q53F19 620 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 EFCAB13Q8IY85 973 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 RHPN1Q8TCX5 695 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 JPH4Q96JJ6 628 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 OSBPL5Q9H0X9 879 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 PHAXQ9H814 394 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 L1RE1Q9UN81 338 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 PPFIA4O75335 1185 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 GGT6Q6P531 493 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 CNTROBQ8N137 903 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 AFAP1L1Q8TED9 768 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 THOC1Q96FV9 657 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 BAG1Q99933 345 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 ZSWIM6Q9HCJ5 1215 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 BIN2Q9UBW5 565 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 TRIM10Q9UDY6 481 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 SHROOM2Q13796 1616 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 ADCY9O60503 1353 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 EBAG9O00559 213 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 RBM43Q6ZSC3 357 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 Q6ZUG5 572 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 ZNF589Q86UQ0 364 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 TBC1D31Q96DN5 1066 aa8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 BCCIPQ9P287 314 aaKnown RBP eCLIP8.33□□□□□ -1.08
LIMCH1-207ENST00000508466 TTC21BQ7Z4L5 1316 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 SALL3Q9BXA9 1300 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 ATP10AO60312 1499 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 A0A0D9SFI3 127 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 SLC27A2O14975 620 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 ATP8B2P98198 1209 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 RESTQ13127 1097 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 SH2D3CQ8N5H7 860 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 ACRBPQ8NEB7 543 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 CNKSR2Q8WXI2 1034 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 PIK3R5Q8WYR1 880 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 RABGGTAQ92696 567 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 KIF9Q9HAQ2 790 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 TSPYL4Q9UJ04 414 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 IQGAP2Q13576 1575 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 SYF2O95926 243 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 SLC3A2P08195 630 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 RDXP35241 583 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 STX17P56962 302 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 GNGT1P63211 74 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 PDCLQ13371 301 aa8.32□□□□□ -1.08
LIMCH1-207ENST00000508466 PTCH1Q13635 1447 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms