RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 HOXB7P09629 217 aa21.45■■□□□ 1.02
VIM-208ENST00000497849 CCDC152Q4G0S7 254 aa21.45■■□□□ 1.02
VIM-208ENST00000497849 ARMC9Q7Z3E5 817 aa21.45■■□□□ 1.02
VIM-208ENST00000497849 HYPKQ9NX55 129 aa21.45■■□□□ 1.02
VIM-208ENST00000497849 FZD1Q9UP38 647 aa21.44■■□□□ 1.02
VIM-208ENST00000497849 LAS1LQ9Y4W2 734 aaKnown RBP21.44■■□□□ 1.02
VIM-208ENST00000497849 PDE8AO60658 829 aa21.43■■□□□ 1.02
VIM-208ENST00000497849 IFNL1Q8IU54 200 aa21.43■■□□□ 1.02
VIM-208ENST00000497849 ANKRD18AQ8IVF6 992 aa21.43■■□□□ 1.02
VIM-208ENST00000497849 OGFOD1Q8N543 542 aa21.43■■□□□ 1.02
VIM-208ENST00000497849 JARID2Q92833 1246 aaPredicted RBP21.43■■□□□ 1.02
VIM-208ENST00000497849 MED23Q9ULK4 1368 aa21.43■■□□□ 1.02
VIM-208ENST00000497849 PCCAP05165 728 aaPredicted RBP21.42■■□□□ 1.02
VIM-208ENST00000497849 HSP90B1P14625 803 aaKnown RBP21.42■■□□□ 1.02
VIM-208ENST00000497849 NEUROD2Q15784 382 aa21.42■■□□□ 1.02
VIM-208ENST00000497849 RIC3Q7Z5B4 369 aa21.42■■□□□ 1.02
VIM-208ENST00000497849 ANGEL1Q9UNK9 670 aaKnown RBP21.42■■□□□ 1.02
VIM-208ENST00000497849 PTPN22Q9Y2R2 807 aa21.42■■□□□ 1.02
VIM-208ENST00000497849 SPEF2Q9C093 1822 aa21.41■■□□□ 1.02
VIM-208ENST00000497849 MYO3BQ8WXR4 1341 aa21.41■■□□□ 1.02
VIM-208ENST00000497849 IGF2BP3O00425 579 aaKnown RBP eCLIP21.41■■□□□ 1.02
VIM-208ENST00000497849 EN2P19622 333 aaPredicted RBP21.41■■□□□ 1.02
VIM-208ENST00000497849 STRIP1Q5VSL9 837 aa21.41■■□□□ 1.02
VIM-208ENST00000497849 MYD88Q99836 296 aa21.41■■□□□ 1.02
VIM-208ENST00000497849 TRIM35Q9UPQ4 493 aa21.41■■□□□ 1.02
VIM-208ENST00000497849 MANSC4A6NHS7 340 aaPredicted RBP21.4■■□□□ 1.02
VIM-208ENST00000497849 INHBEP58166 350 aa21.4■■□□□ 1.02
VIM-208ENST00000497849 APOBEC3FQ8IUX4 373 aaKnown RBP21.4■■□□□ 1.02
VIM-208ENST00000497849 ZBED3Q96IU2 234 aaPredicted RBP21.4■■□□□ 1.02
VIM-208ENST00000497849 PHAXQ9H814 394 aaKnown RBP21.4■■□□□ 1.02
VIM-208ENST00000497849 SZT2Q5T011 3432 aa21.4■■□□□ 1.02
VIM-208ENST00000497849 DUSP27Q5VZP5 1158 aa21.39■■□□□ 1.01
VIM-208ENST00000497849 TXNRD3Q86VQ6 643 aa21.39■■□□□ 1.01
VIM-208ENST00000497849 CCDC191Q8NCU4 936 aa21.39■■□□□ 1.01
VIM-208ENST00000497849 FBXW7Q969H0 707 aa21.39■■□□□ 1.01
VIM-208ENST00000497849 ARMC5Q96C12 935 aa21.39■■□□□ 1.01
VIM-208ENST00000497849 MINPP1Q9UNW1 487 aa21.39■■□□□ 1.01
VIM-208ENST00000497849 CEP290O15078 2479 aa21.38■■□□□ 1.01
VIM-208ENST00000497849 CAP1Q01518 475 aa21.38■■□□□ 1.01
VIM-208ENST00000497849 GOLGA2Q08379 1002 aa21.38■■□□□ 1.01
VIM-208ENST00000497849 MAP3K11Q16584 847 aa21.38■■□□□ 1.01
VIM-208ENST00000497849 CD99L2Q8TCZ2 262 aa21.38■■□□□ 1.01
VIM-208ENST00000497849 SLC10A4Q96EP9 437 aa21.38■■□□□ 1.01
VIM-208ENST00000497849 CLMNQ96JQ2 1002 aa21.38■■□□□ 1.01
VIM-208ENST00000497849 SSC5DA1L4H1 1573 aa21.38■■□□□ 1.01
VIM-208ENST00000497849 ZBTB48P10074 688 aaPredicted RBP21.37■■□□□ 1.01
VIM-208ENST00000497849 MMP14P50281 582 aa21.37■■□□□ 1.01
VIM-208ENST00000497849 CCDC146Q8IYE0 955 aa21.37■■□□□ 1.01
VIM-208ENST00000497849 ERO1AQ96HE7 468 aa21.37■■□□□ 1.01
VIM-208ENST00000497849 WNK4Q96J92 1243 aa21.37■■□□□ 1.01
VIM-208ENST00000497849 COA1Q9GZY4 146 aa21.37■■□□□ 1.01
VIM-208ENST00000497849 COLQQ9Y215 455 aaPredicted RBP21.37■■□□□ 1.01
VIM-208ENST00000497849 TRIOBPQ9H2D6 2365 aa21.36■■□□□ 1.01
VIM-208ENST00000497849 CCT4P50991 539 aaKnown RBP21.36■■□□□ 1.01
VIM-208ENST00000497849 KIAA0825Q8IV33 1275 aa21.36■■□□□ 1.01
VIM-208ENST00000497849 BSDC1Q9NW68 430 aaPredicted RBP21.36■■□□□ 1.01
VIM-208ENST00000497849 CWC25Q9NXE8 425 aaPredicted RBP21.36■■□□□ 1.01
VIM-208ENST00000497849 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.36■■□□□ 1.01
VIM-208ENST00000497849 COL1A1P02452 1464 aaPredicted RBP21.36■■□□□ 1.01
VIM-208ENST00000497849 MYH3P11055 1940 aa21.35■■□□□ 1.01
VIM-208ENST00000497849 CRHR2Q13324 411 aa21.35■■□□□ 1.01
VIM-208ENST00000497849 CDC5LQ99459 802 aaKnown RBP21.35■■□□□ 1.01
VIM-208ENST00000497849 DEFB129Q9H1M3 183 aa21.35■■□□□ 1.01
VIM-208ENST00000497849 TTLL5Q6EMB2 1281 aa21.34■■□□□ 1.01
VIM-208ENST00000497849 TTLL11Q8NHH1 800 aa21.34■■□□□ 1.01
VIM-208ENST00000497849 EFCC1Q9HA90 598 aa21.34■■□□□ 1.01
VIM-208ENST00000497849 ECM29Q5VYK3 1845 aa21.34■■□□□ 1.01
VIM-208ENST00000497849 KLRK1P26718 216 aa21.33■■□□□ 1.01
VIM-208ENST00000497849 CTSWP56202 376 aa21.33■■□□□ 1.01
VIM-208ENST00000497849 GREM2Q9H772 168 aa21.33■■□□□ 1.01
VIM-208ENST00000497849 GJA5P36382 358 aa21.32■■□□□ 1
VIM-208ENST00000497849 PTPN18Q99952 460 aa21.32■■□□□ 1
VIM-208ENST00000497849 METTL22Q9BUU2 404 aaPredicted RBP21.32■■□□□ 1
VIM-208ENST00000497849 MBIPQ9NS73 344 aa21.32■■□□□ 1
VIM-208ENST00000497849 SP3Q02447 781 aa21.31■■□□□ 1
VIM-208ENST00000497849 ZNF333Q96JL9 665 aa21.31■■□□□ 1
VIM-208ENST00000497849 PCDHAC2Q9Y5I4 1007 aa21.31■■□□□ 1
VIM-208ENST00000497849 PPP1R12BO60237 982 aaPredicted RBP21.3■■□□□ 1
VIM-208ENST00000497849 GTF2IP78347 998 aa21.3■■□□□ 1
VIM-208ENST00000497849 TMEM106CQ9BVX2 250 aa21.3■■□□□ 1
VIM-208ENST00000497849 LEMD3Q9Y2U8 911 aa21.3■■□□□ 1
VIM-208ENST00000497849 TESPA1A2RU30 521 aaPredicted RBP21.29■■□□□ 1
VIM-208ENST00000497849 UNCXA6NJT0 531 aa21.29■■□□□ 1
VIM-208ENST00000497849 ZNF804BA4D1E1 1349 aa21.29■■□□□ 1
VIM-208ENST00000497849 ZNF853P0CG23 659 aa21.28■■□□□ 1
VIM-208ENST00000497849 DLGAP5Q15398 846 aa21.28■■□□□ 1
VIM-208ENST00000497849 OTUD7BQ6GQQ9 843 aa21.28■■□□□ 1
VIM-208ENST00000497849 CERS5Q8N5B7 392 aa21.28■■□□□ 1
VIM-208ENST00000497849 MTMR14Q8NCE2 650 aa21.28■■□□□ 1
VIM-208ENST00000497849 RUNDC1Q96C34 613 aa21.28■■□□□ 1
VIM-208ENST00000497849 PPP2R3BQ9Y5P8 575 aa21.28■■□□□ 1
VIM-208ENST00000497849 OTOFQ9HC10 1997 aa21.28■■□□□ 1
VIM-208ENST00000497849 ELL2O00472 640 aaPredicted RBP21.27■■□□□ 1
VIM-208ENST00000497849 USP2O75604 605 aaPredicted RBP21.27■■□□□ 1
VIM-208ENST00000497849 IGKV5-2P06315 115 aa21.27■■□□□ 1
VIM-208ENST00000497849 NBPF12Q5TAG4 269 aaPredicted RBP21.27■■□□□ 1
VIM-208ENST00000497849 OTUD5Q96G74 571 aa21.27■■□□□ 1
VIM-208ENST00000497849 AOX1Q06278 1338 aa21.27■□□□□ 0.99
VIM-208ENST00000497849 RANBP2P49792 3224 aaKnown RBP21.27■□□□□ 0.99
VIM-208ENST00000497849 H0YGN5 161 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms