RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 C7orf69Q9H7B7 122 aa8.89□□□□□ -0.99
VPS50-219ENST00000495039 STIM2Q9P246 746 aa8.89□□□□□ -0.99
VPS50-219ENST00000495039 EPHA1P21709 976 aa8.88□□□□□ -0.99
VPS50-219ENST00000495039 TXKP42681 527 aa8.88□□□□□ -0.99
VPS50-219ENST00000495039 GP2P55259 537 aaKnown RBP8.88□□□□□ -0.99
VPS50-219ENST00000495039 RNF43Q68DV7 783 aa8.88□□□□□ -0.99
VPS50-219ENST00000495039 CAPN12Q6ZSI9 719 aa8.88□□□□□ -0.99
VPS50-219ENST00000495039 KIAA1211Q6ZU35 1233 aa8.88□□□□□ -0.99
VPS50-219ENST00000495039 NCAPG2Q86XI2 1143 aa8.88□□□□□ -0.99
VPS50-219ENST00000495039 MYRFLQ96LU7 910 aa8.88□□□□□ -0.99
VPS50-219ENST00000495039 DBNDD2Q9BQY9 259 aa8.88□□□□□ -0.99
VPS50-219ENST00000495039 TRIM42Q8IWZ5 723 aa8.87□□□□□ -0.99
VPS50-219ENST00000495039 FOXD4L4Q8WXT5 416 aaPredicted RBP8.87□□□□□ -0.99
VPS50-219ENST00000495039 SEC31BQ9NQW1 1179 aa8.87□□□□□ -0.99
VPS50-219ENST00000495039 OAS3Q9Y6K5 1087 aaKnown RBP8.87□□□□□ -0.99
VPS50-219ENST00000495039 CYP2E1P05181 493 aaPredicted RBP8.86□□□□□ -0.99
VPS50-219ENST00000495039 PDE12Q6L8Q7 609 aaKnown RBP8.86□□□□□ -0.99
VPS50-219ENST00000495039 ADAMTSL4Q6UY14 1074 aa8.86□□□□□ -0.99
VPS50-219ENST00000495039 CEP120Q8N960 986 aa8.86□□□□□ -0.99
VPS50-219ENST00000495039 SH2B1Q9NRF2 756 aaPredicted RBP8.86□□□□□ -0.99
VPS50-219ENST00000495039 HMX2A2RU54 273 aa8.85□□□□□ -0.99
VPS50-219ENST00000495039 H3BRJ5 948 aa8.85□□□□□ -0.99
VPS50-219ENST00000495039 SPINK2P20155 84 aa8.85□□□□□ -0.99
VPS50-219ENST00000495039 CABP4P57796 275 aa8.85□□□□□ -0.99
VPS50-219ENST00000495039 UBASH3BQ8TF42 649 aa8.85□□□□□ -0.99
VPS50-219ENST00000495039 WNT8BQ93098 351 aa8.85□□□□□ -0.99
VPS50-219ENST00000495039 FMNL2Q96PY5 1086 aa8.85□□□□□ -0.99
VPS50-219ENST00000495039 ADAM19Q9H013 955 aa8.85□□□□□ -0.99
VPS50-219ENST00000495039 DDX3YO15523 660 aaKnown RBP8.84□□□□□ -0.99
VPS50-219ENST00000495039 SART1O43290 800 aaKnown RBP8.84□□□□□ -0.99
VPS50-219ENST00000495039 ADAM11O75078 769 aa8.84□□□□□ -0.99
VPS50-219ENST00000495039 PIP4K2BP78356 416 aa8.84□□□□□ -0.99
VPS50-219ENST00000495039 ANKRD34AQ69YU3 496 aa8.84□□□□□ -0.99
VPS50-219ENST00000495039 CLEC10AQ8IUN9 316 aa8.84□□□□□ -0.99
VPS50-219ENST00000495039 FAM20CQ8IXL6 584 aa8.84□□□□□ -0.99
VPS50-219ENST00000495039 KLHDC7BQ96G42 594 aa8.84□□□□□ -0.99
VPS50-219ENST00000495039 POP1Q99575 1024 aaKnown RBP8.84□□□□□ -0.99
VPS50-219ENST00000495039 ELP3Q9H9T3 547 aa8.84□□□□□ -0.99
VPS50-219ENST00000495039 ZBTB39O15060 712 aa8.83□□□□□ -1
VPS50-219ENST00000495039 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.83□□□□□ -1
VPS50-219ENST00000495039 ZNF438Q7Z4V0 828 aa8.83□□□□□ -1
VPS50-219ENST00000495039 CLP1Q92989 425 aaKnown RBP8.83□□□□□ -1
VPS50-219ENST00000495039 FAM83CQ9BQN1 747 aa8.83□□□□□ -1
VPS50-219ENST00000495039 KRTAP9-9Q9BYP9 154 aa8.83□□□□□ -1
VPS50-219ENST00000495039 KRTAP9-4Q9BYQ2 154 aa8.83□□□□□ -1
VPS50-219ENST00000495039 RNF208Q9H0X6 261 aa8.83□□□□□ -1
VPS50-219ENST00000495039 OSGEPQ9NPF4 335 aa8.83□□□□□ -1
VPS50-219ENST00000495039 TMEM63CQ9P1W3 806 aa8.83□□□□□ -1
VPS50-219ENST00000495039 PRR19A6NJB7 356 aa8.82□□□□□ -1
VPS50-219ENST00000495039 ATG7O95352 703 aa8.82□□□□□ -1
VPS50-219ENST00000495039 RPLP1P05386 114 aaKnown RBP8.82□□□□□ -1
VPS50-219ENST00000495039 TAL1P17542 331 aaPredicted RBP8.82□□□□□ -1
VPS50-219ENST00000495039 TMEM164Q5U3C3 297 aa8.82□□□□□ -1
VPS50-219ENST00000495039 DTX1Q86Y01 620 aa8.82□□□□□ -1
VPS50-219ENST00000495039 NUDT16Q96DE0 195 aaKnown RBP8.82□□□□□ -1
VPS50-219ENST00000495039 KCNF1Q9H3M0 494 aa8.82□□□□□ -1
VPS50-219ENST00000495039 KANSL3Q9P2N6 904 aa8.82□□□□□ -1
VPS50-219ENST00000495039 HIF3AQ9Y2N7 669 aa8.82□□□□□ -1
VPS50-219ENST00000495039 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.81□□□□□ -1
VPS50-219ENST00000495039 BMP3P12645 472 aa8.81□□□□□ -1
VPS50-219ENST00000495039 BEND4Q6ZU67 534 aa8.81□□□□□ -1
VPS50-219ENST00000495039 PREPP48147 710 aa8.8□□□□□ -1
VPS50-219ENST00000495039 SRPK2P78362 688 aaKnown RBP8.8□□□□□ -1
VPS50-219ENST00000495039 FDX2Q6P4F2 183 aa8.8□□□□□ -1
VPS50-219ENST00000495039 SHKBP1Q8TBC3 707 aa8.8□□□□□ -1
VPS50-219ENST00000495039 WNT11O96014 354 aa8.79□□□□□ -1
VPS50-219ENST00000495039 NLRP12P59046 1061 aa8.79□□□□□ -1
VPS50-219ENST00000495039 RUSC1Q9BVN2 902 aa8.79□□□□□ -1
VPS50-219ENST00000495039 ZMYND15Q9H091 742 aa8.79□□□□□ -1
VPS50-219ENST00000495039 SALL4Q9UJQ4 1053 aa8.79□□□□□ -1
VPS50-219ENST00000495039 ADAMTS4O75173 837 aa8.78□□□□□ -1
VPS50-219ENST00000495039 YBX3P16989 372 aaKnown RBP eCLIP8.78□□□□□ -1
VPS50-219ENST00000495039 CES1P23141 567 aa8.78□□□□□ -1
VPS50-219ENST00000495039 SLC7A3Q8WY07 619 aa8.78□□□□□ -1
VPS50-219ENST00000495039 CNTN3Q9P232 1028 aa8.78□□□□□ -1
VPS50-219ENST00000495039 PDE2AO00408 941 aaPredicted RBP8.77□□□□□ -1.01
VPS50-219ENST00000495039 GAS2O43903 313 aaKnown RBP8.77□□□□□ -1.01
VPS50-219ENST00000495039 PCSK2P16519 638 aa8.77□□□□□ -1.01
VPS50-219ENST00000495039 ARL4DP49703 201 aa8.77□□□□□ -1.01
VPS50-219ENST00000495039 XKR5Q6UX68 686 aa8.77□□□□□ -1.01
VPS50-219ENST00000495039 ATCAYQ86WG3 371 aa8.77□□□□□ -1.01
VPS50-219ENST00000495039 DZANK1Q9NVP4 752 aa8.77□□□□□ -1.01
VPS50-219ENST00000495039 RNF114Q9Y508 228 aa8.77□□□□□ -1.01
VPS50-219ENST00000495039 NFKBIEO00221 500 aa8.76□□□□□ -1.01
VPS50-219ENST00000495039 ACPPP15309 386 aa8.76□□□□□ -1.01
VPS50-219ENST00000495039 C1orf127Q8N9H9 656 aa8.76□□□□□ -1.01
VPS50-219ENST00000495039 TTC16Q8NEE8 873 aa8.76□□□□□ -1.01
VPS50-219ENST00000495039 WDR64B1ANS9 1081 aa8.75□□□□□ -1.01
VPS50-219ENST00000495039 ATP2B4P23634 1241 aa8.75□□□□□ -1.01
VPS50-219ENST00000495039 C19orf57Q0VDD7 668 aa8.75□□□□□ -1.01
VPS50-219ENST00000495039 GIMAP7Q8NHV1 300 aa8.75□□□□□ -1.01
VPS50-219ENST00000495039 EDEM1Q92611 657 aa8.75□□□□□ -1.01
VPS50-219ENST00000495039 PMEPA1Q969W9 287 aa8.75□□□□□ -1.01
VPS50-219ENST00000495039 SEPT3Q9UH03 358 aa8.75□□□□□ -1.01
VPS50-219ENST00000495039 SOX13Q9UN79 622 aa8.75□□□□□ -1.01
VPS50-219ENST00000495039 MEGF11A6BM72 1044 aa8.74□□□□□ -1.01
VPS50-219ENST00000495039 MFSD14AQ96MC6 490 aa8.74□□□□□ -1.01
VPS50-219ENST00000495039 PIM2Q9P1W9 311 aa8.74□□□□□ -1.01
VPS50-219ENST00000495039 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.74□□□□□ -1.01
VPS50-219ENST00000495039 MAP4P27816 1152 aaKnown RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms