RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 SP3Q02447 781 aa18.05■□□□□ 0.48
EXOSC3-207ENST00000490516 SLC9C1Q4G0N8 1177 aa18.05■□□□□ 0.48
EXOSC3-207ENST00000490516 WNK4Q96J92 1243 aa18.05■□□□□ 0.48
EXOSC3-207ENST00000490516 CLMNQ96JQ2 1002 aa18.05■□□□□ 0.48
EXOSC3-207ENST00000490516 PTCH2Q9Y6C5 1203 aa18.05■□□□□ 0.48
EXOSC3-207ENST00000490516 SASH1O94885 1247 aa18.04■□□□□ 0.48
EXOSC3-207ENST00000490516 SEC31BQ9NQW1 1179 aa18.04■□□□□ 0.48
EXOSC3-207ENST00000490516 ZBTB48P10074 688 aaPredicted RBP18.03■□□□□ 0.48
EXOSC3-207ENST00000490516 NBPF11Q86T75 865 aa18.03■□□□□ 0.48
EXOSC3-207ENST00000490516 ZSWIM8A7E2V4 1837 aa18.02■□□□□ 0.48
EXOSC3-207ENST00000490516 WTIPA6NIX2 430 aaPredicted RBP18.02■□□□□ 0.48
EXOSC3-207ENST00000490516 ATP5J2-PTCD1G3V325 749 aa18.02■□□□□ 0.48
EXOSC3-207ENST00000490516 DPF3Q92784 378 aa18.02■□□□□ 0.48
EXOSC3-207ENST00000490516 TSPYL4Q9UJ04 414 aa18.02■□□□□ 0.48
EXOSC3-207ENST00000490516 MNX1P50219 401 aaPredicted RBP18.01■□□□□ 0.47
EXOSC3-207ENST00000490516 PODNQ7Z5L7 613 aa18.01■□□□□ 0.47
EXOSC3-207ENST00000490516 OGFOD1Q8N543 542 aa18.01■□□□□ 0.47
EXOSC3-207ENST00000490516 PTPN18Q99952 460 aa18.01■□□□□ 0.47
EXOSC3-207ENST00000490516 IRS4O14654 1257 aaPredicted RBP18■□□□□ 0.47
EXOSC3-207ENST00000490516 DACT2Q5SW24 774 aa18■□□□□ 0.47
EXOSC3-207ENST00000490516 ISCA1Q9BUE6 129 aa18■□□□□ 0.47
EXOSC3-207ENST00000490516 PRO3102Q9H379 93 aa18■□□□□ 0.47
EXOSC3-207ENST00000490516 SSC5DA1L4H1 1573 aa18■□□□□ 0.47
EXOSC3-207ENST00000490516 SOX1O00570 391 aaPredicted RBP17.99■□□□□ 0.47
EXOSC3-207ENST00000490516 GJA5P36382 358 aa17.99■□□□□ 0.47
EXOSC3-207ENST00000490516 OTUD7BQ6GQQ9 843 aa17.99■□□□□ 0.47
EXOSC3-207ENST00000490516 APOBEC3FQ8IUX4 373 aaKnown RBP17.99■□□□□ 0.47
EXOSC3-207ENST00000490516 SH3TC2Q8TF17 1288 aa17.99■□□□□ 0.47
EXOSC3-207ENST00000490516 FBXW7Q969H0 707 aa17.99■□□□□ 0.47
EXOSC3-207ENST00000490516 MAP3K11Q16584 847 aa17.98■□□□□ 0.47
EXOSC3-207ENST00000490516 SPEF2Q9C093 1822 aa17.98■□□□□ 0.47
EXOSC3-207ENST00000490516 XDHP47989 1333 aa17.98■□□□□ 0.47
EXOSC3-207ENST00000490516 NEFMP07197 916 aa17.97■□□□□ 0.47
EXOSC3-207ENST00000490516 PPP2R1AP30153 589 aa17.97■□□□□ 0.47
EXOSC3-207ENST00000490516 NFE2L2Q16236 605 aa17.97■□□□□ 0.47
EXOSC3-207ENST00000490516 PLBD2Q8NHP8 589 aa17.97■□□□□ 0.47
EXOSC3-207ENST00000490516 SHISA4Q96DD7 197 aa17.97■□□□□ 0.47
EXOSC3-207ENST00000490516 LRCH3Q96II8 777 aa17.97■□□□□ 0.47
EXOSC3-207ENST00000490516 ECM29Q5VYK3 1845 aa17.97■□□□□ 0.47
EXOSC3-207ENST00000490516 OTOFQ9HC10 1997 aa17.97■□□□□ 0.47
EXOSC3-207ENST00000490516 DEFB129Q9H1M3 183 aa17.96■□□□□ 0.47
EXOSC3-207ENST00000490516 ATP2B4P23634 1241 aa17.95■□□□□ 0.46
EXOSC3-207ENST00000490516 ZBED3Q96IU2 234 aaPredicted RBP17.95■□□□□ 0.46
EXOSC3-207ENST00000490516 CCDC85AQ96PX6 553 aaPredicted RBP17.95■□□□□ 0.46
EXOSC3-207ENST00000490516 PLEKHF1Q96S99 279 aa17.95■□□□□ 0.46
EXOSC3-207ENST00000490516 MYO3BQ8WXR4 1341 aa17.95■□□□□ 0.46
EXOSC3-207ENST00000490516 LAMA3Q16787 3333 aa17.95■□□□□ 0.46
EXOSC3-207ENST00000490516 COL1A1P02452 1464 aaPredicted RBP17.95■□□□□ 0.46
EXOSC3-207ENST00000490516 TESPA1A2RU30 521 aaPredicted RBP17.94■□□□□ 0.46
EXOSC3-207ENST00000490516 PPP1R12BO60237 982 aaPredicted RBP17.94■□□□□ 0.46
EXOSC3-207ENST00000490516 ARHGEF6Q15052 776 aa17.94■□□□□ 0.46
EXOSC3-207ENST00000490516 ANKRD13DQ6ZTN6 518 aa17.94■□□□□ 0.46
EXOSC3-207ENST00000490516 KIAA0825Q8IV33 1275 aa17.94■□□□□ 0.46
EXOSC3-207ENST00000490516 CHPF2Q9P2E5 772 aa17.94■□□□□ 0.46
EXOSC3-207ENST00000490516 KRT24Q2M2I5 525 aa17.93■□□□□ 0.46
EXOSC3-207ENST00000490516 STRIP1Q5VSL9 837 aa17.93■□□□□ 0.46
EXOSC3-207ENST00000490516 ARHGAP39Q9C0H5 1083 aa17.93■□□□□ 0.46
EXOSC3-207ENST00000490516 MED23Q9ULK4 1368 aa17.92■□□□□ 0.46
EXOSC3-207ENST00000490516 MTFR1Q15390 333 aa17.92■□□□□ 0.46
EXOSC3-207ENST00000490516 USP2O75604 605 aaPredicted RBP17.91■□□□□ 0.46
EXOSC3-207ENST00000490516 TAF1CQ15572 869 aaPredicted RBP17.91■□□□□ 0.46
EXOSC3-207ENST00000490516 UNC80Q8N2C7 3258 aa17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 UNCXA6NJT0 531 aa17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 ZBTB7BO15156 539 aaPredicted RBP17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 IREB2P48200 963 aaKnown RBP17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 CCDC152Q4G0S7 254 aa17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 NBPF12Q5TAG4 269 aaPredicted RBP17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 TXNRD3Q86VQ6 643 aa17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 ANKRD18AQ8IVF6 992 aa17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 ZBTB38Q8NAP3 1195 aaPredicted RBP17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 MS4A4AQ96JQ5 239 aa17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 ZFYVE28Q9HCC9 887 aa17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 PCDHAC2Q9Y5I4 1007 aa17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 CLSPNQ9HAW4 1339 aa17.9■□□□□ 0.46
EXOSC3-207ENST00000490516 MMP14P50281 582 aa17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 TRIM28Q13263 835 aaKnown RBP17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 TTLL5Q6EMB2 1281 aa17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 UBE2Q1Q7Z7E8 422 aa17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 ANKRD13AQ8IZ07 590 aa17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 BRI3BPQ8WY22 251 aa17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 JARID2Q92833 1246 aaPredicted RBP17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 OPTNQ96CV9 577 aa17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 HTATIP2Q9BUP3 242 aa17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 COL25A1Q9BXS0 654 aaPredicted RBP17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 COA1Q9GZY4 146 aa17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 ELP3Q9H9T3 547 aa17.89■□□□□ 0.45
EXOSC3-207ENST00000490516 DLGAP5Q15398 846 aa17.88■□□□□ 0.45
EXOSC3-207ENST00000490516 SUPT20HL1Q3ZLR7 823 aa17.88■□□□□ 0.45
EXOSC3-207ENST00000490516 PPP2R3BQ9Y5P8 575 aa17.88■□□□□ 0.45
EXOSC3-207ENST00000490516 NR2E3Q9Y5X4 410 aa17.88■□□□□ 0.45
EXOSC3-207ENST00000490516 A0A1W2PPC1 479 aa17.87■□□□□ 0.45
EXOSC3-207ENST00000490516 CLRN2A0PK11 232 aa17.87■□□□□ 0.45
EXOSC3-207ENST00000490516 ECM2O94769 699 aaPredicted RBP17.87■□□□□ 0.45
EXOSC3-207ENST00000490516 FAM43AQ8N2R8 423 aa17.87■□□□□ 0.45
EXOSC3-207ENST00000490516 CNKSR2Q8WXI2 1034 aa17.87■□□□□ 0.45
EXOSC3-207ENST00000490516 CCL15-CCL14A0A0B4J2E2 113 aa17.86■□□□□ 0.45
EXOSC3-207ENST00000490516 PDE8AO60658 829 aa17.86■□□□□ 0.45
EXOSC3-207ENST00000490516 CCT4P50991 539 aaKnown RBP17.86■□□□□ 0.45
EXOSC3-207ENST00000490516 GTF2IP78347 998 aa17.86■□□□□ 0.45
EXOSC3-207ENST00000490516 CCL15Q16663 113 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 144.3 ms