RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 TAF1P21675 1872 aa11.43□□□□□ -0.58
HDAC6-232ENST00000489053 TRAF5O00463 557 aa11.43□□□□□ -0.58
HDAC6-232ENST00000489053 TAF5LO75529 589 aa11.43□□□□□ -0.58
HDAC6-232ENST00000489053 CELF2O95319 508 aaKnown RBP11.43□□□□□ -0.58
HDAC6-232ENST00000489053 EPHA10Q5JZY3 1008 aa11.43□□□□□ -0.58
HDAC6-232ENST00000489053 KRT26Q7Z3Y9 468 aa11.43□□□□□ -0.58
HDAC6-232ENST00000489053 TRMT2AQ8IZ69 625 aaKnown RBP11.43□□□□□ -0.58
HDAC6-232ENST00000489053 FRAT1Q92837 279 aaPredicted RBP11.43□□□□□ -0.58
HDAC6-232ENST00000489053 GLIS2Q9BZE0 524 aaPredicted RBP11.43□□□□□ -0.58
HDAC6-232ENST00000489053 HDAC9Q9UKV0 1011 aa11.43□□□□□ -0.58
HDAC6-232ENST00000489053 MROH5Q6ZUA9 1318 aa11.42□□□□□ -0.58
HDAC6-232ENST00000489053 SHTN1A0MZ66 631 aa11.42□□□□□ -0.58
HDAC6-232ENST00000489053 FRAT2O75474 233 aaPredicted RBP11.42□□□□□ -0.58
HDAC6-232ENST00000489053 ECE1P42892 770 aa11.42□□□□□ -0.58
HDAC6-232ENST00000489053 RARSP54136 660 aaKnown RBP11.42□□□□□ -0.58
HDAC6-232ENST00000489053 DEFB115Q30KQ5 88 aa11.42□□□□□ -0.58
HDAC6-232ENST00000489053 METTL24Q5JXM2 366 aa11.42□□□□□ -0.58
HDAC6-232ENST00000489053 STRIP1Q5VSL9 837 aa11.42□□□□□ -0.58
HDAC6-232ENST00000489053 TTLL5Q6EMB2 1281 aa11.42□□□□□ -0.58
HDAC6-232ENST00000489053 USP48Q86UV5 1035 aa11.42□□□□□ -0.58
HDAC6-232ENST00000489053 CNTNAP1P78357 1384 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 UTYO14607 1347 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 COL4A1P02462 1669 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 MMP14P50281 582 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 GTF2IP78347 998 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 JMYQ8N9B5 988 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 BEGAINQ9BUH8 593 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 MYOZ2Q9NPC6 264 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 GGA3Q9NZ52 723 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 PCNTO95613 3336 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 MYH3P11055 1940 aa11.41□□□□□ -0.58
HDAC6-232ENST00000489053 HIRAP54198 1017 aaPredicted RBP11.4□□□□□ -0.58
HDAC6-232ENST00000489053 SCARF1Q14162 830 aa11.4□□□□□ -0.58
HDAC6-232ENST00000489053 CAVIN4Q5BKX8 364 aa11.4□□□□□ -0.58
HDAC6-232ENST00000489053 FTSJ3Q8IY81 847 aaKnown RBP11.4□□□□□ -0.58
HDAC6-232ENST00000489053 USP44Q9H0E7 712 aa11.4□□□□□ -0.58
HDAC6-232ENST00000489053 CD209Q9NNX6 404 aa11.4□□□□□ -0.58
HDAC6-232ENST00000489053 WTIPA6NIX2 430 aaPredicted RBP11.39□□□□□ -0.59
HDAC6-232ENST00000489053 RASSF10A6NK89 507 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 GNAI3P08754 354 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 KLRK1P26718 216 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 VEGFBP49765 207 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 RBM5P52756 815 aaKnown RBP eCLIP11.39□□□□□ -0.59
HDAC6-232ENST00000489053 ZNF280AP59817 542 aaPredicted RBP11.39□□□□□ -0.59
HDAC6-232ENST00000489053 UBE4AQ14139 1066 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 RABL6Q3YEC7 729 aaPredicted RBP11.39□□□□□ -0.59
HDAC6-232ENST00000489053 DACT2Q5SW24 774 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 ANGEL2Q5VTE6 544 aaKnown RBP11.39□□□□□ -0.59
HDAC6-232ENST00000489053 TXNRD3Q86VQ6 643 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 KIAA0825Q8IV33 1275 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 C2orf69Q8N8R5 385 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 ARHGAP45Q92619 1136 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 PGAP2Q9UHJ9 254 aa11.39□□□□□ -0.59
HDAC6-232ENST00000489053 LTBP1Q14766 1721 aa11.38□□□□□ -0.59
HDAC6-232ENST00000489053 SNAP23O00161 211 aa11.38□□□□□ -0.59
HDAC6-232ENST00000489053 MYO1BO43795 1136 aa11.38□□□□□ -0.59
HDAC6-232ENST00000489053 IFIT1P09914 478 aaKnown RBP11.38□□□□□ -0.59
HDAC6-232ENST00000489053 HSPA1AP0DMV8 641 aaKnown RBP11.38□□□□□ -0.59
HDAC6-232ENST00000489053 HSPA1BP0DMV9 641 aaKnown RBP11.38□□□□□ -0.59
HDAC6-232ENST00000489053 HIBADHP31937 336 aaKnown RBP11.38□□□□□ -0.59
HDAC6-232ENST00000489053 NF2P35240 595 aa11.38□□□□□ -0.59
HDAC6-232ENST00000489053 BRPF1P55201 1214 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-232ENST00000489053 FMR1Q06787 632 aaKnown RBP eCLIP11.38□□□□□ -0.593e-7■■■■■ 27.4
HDAC6-232ENST00000489053 TTLL12Q14166 644 aaPredicted RBP11.38□□□□□ -0.59
HDAC6-232ENST00000489053 C15orf52Q6ZUT6 534 aaKnown RBP11.38□□□□□ -0.59
HDAC6-232ENST00000489053 ANKRD44Q8N8A2 993 aa11.38□□□□□ -0.59
HDAC6-232ENST00000489053 CAPNS2Q96L46 248 aa11.38□□□□□ -0.59
HDAC6-232ENST00000489053 MXD3Q9BW11 206 aa11.38□□□□□ -0.59
HDAC6-232ENST00000489053 PUS3Q9BZE2 481 aaKnown RBP11.38□□□□□ -0.59
HDAC6-232ENST00000489053 WDR33Q9C0J8 1336 aaKnown RBP11.37□□□□□ -0.59
HDAC6-232ENST00000489053 ADM5C9JUS6 153 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 F8W031 263 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-232ENST00000489053 EGFRP00533 1210 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 HUNKP57058 714 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 MAP2K1Q02750 393 aaPredicted RBP11.37□□□□□ -0.59
HDAC6-232ENST00000489053 PUM3Q15397 648 aaKnown RBP11.37□□□□□ -0.59
HDAC6-232ENST00000489053 DLGAP5Q15398 846 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 ZKSCAN2Q63HK3 967 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 ATF7IPQ6VMQ6 1270 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 KAZALD1Q96I82 304 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 SIL1Q9H173 461 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 JAG2Q9Y219 1238 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 LRRFIP2Q9Y608 721 aaKnown RBP11.37□□□□□ -0.59
HDAC6-232ENST00000489053 TLL2Q9Y6L7 1015 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 SPEF2Q9C093 1822 aa11.37□□□□□ -0.59
HDAC6-232ENST00000489053 ZBED9Q6R2W3 1325 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 ADAMTSL1Q8N6G6 1762 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 ZNF609O15014 1411 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 SASH1O94885 1247 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 SLC5A1P13866 664 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 IL1R1P14778 569 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 GYG1P46976 350 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 CHAF1AQ13111 956 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-232ENST00000489053 LRRC24Q50LG9 513 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 CST9Q5W186 159 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 CLUAP1Q96AJ1 413 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 GMLQ99445 158 aa11.36□□□□□ -0.59
HDAC6-232ENST00000489053 GBA2Q9HCG7 927 aaPredicted RBP11.36□□□□□ -0.59
HDAC6-232ENST00000489053 GNL3LQ9NVN8 582 aaKnown RBP11.36□□□□□ -0.59
HDAC6-232ENST00000489053 CEP126Q9P2H0 1117 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 149.8 ms