RNA–Protein interactions for RNA: ENST00000472116.1

CDHR3-209, Transcript of cadherin related family member 3, humanhuman

TSL 2

Gene CDHR3, Length 993 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-209ENST00000472116 WNK4Q96J92 1243 aa13.54□□□□□ -0.24
CDHR3-209ENST00000472116 COL25A1Q9BXS0 654 aaPredicted RBP13.54□□□□□ -0.24
CDHR3-209ENST00000472116 RSPH6AQ9H0K4 717 aa13.54□□□□□ -0.24
CDHR3-209ENST00000472116 NUDCQ9Y266 331 aa13.54□□□□□ -0.24
CDHR3-209ENST00000472116 USP17L3A6NCW0 530 aa13.53□□□□□ -0.24
CDHR3-209ENST00000472116 USP17L4A6NCW7 530 aa13.53□□□□□ -0.24
CDHR3-209ENST00000472116 WTIPA6NIX2 430 aaPredicted RBP13.53□□□□□ -0.24
CDHR3-209ENST00000472116 PPP1R12BO60237 982 aaPredicted RBP13.53□□□□□ -0.24
CDHR3-209ENST00000472116 WDHD1O75717 1129 aaPredicted RBP13.53□□□□□ -0.24
CDHR3-209ENST00000472116 POLA2Q14181 598 aa13.53□□□□□ -0.24
CDHR3-209ENST00000472116 USP17L1Q7RTZ2 530 aa13.53□□□□□ -0.24
CDHR3-209ENST00000472116 NKX2-3Q8TAU0 364 aa13.53□□□□□ -0.24
CDHR3-209ENST00000472116 CFAP53Q96M91 514 aa13.53□□□□□ -0.24
CDHR3-209ENST00000472116 GGA1Q9UJY5 639 aa13.53□□□□□ -0.24
CDHR3-209ENST00000472116 MYCNP04198 464 aaPredicted RBP13.52□□□□□ -0.25
CDHR3-209ENST00000472116 KIF22Q14807 665 aa13.52□□□□□ -0.25
CDHR3-209ENST00000472116 LRCH3Q96II8 777 aa13.52□□□□□ -0.25
CDHR3-209ENST00000472116 PRO3102Q9H379 93 aa13.52□□□□□ -0.25
CDHR3-209ENST00000472116 ECM29Q5VYK3 1845 aa13.52□□□□□ -0.25
CDHR3-209ENST00000472116 COL1A1P02452 1464 aaPredicted RBP13.51□□□□□ -0.25
CDHR3-209ENST00000472116 MYO3BQ8WXR4 1341 aa13.51□□□□□ -0.25
CDHR3-209ENST00000472116 WNT10BO00744 389 aa13.51□□□□□ -0.25
CDHR3-209ENST00000472116 NEFMP07197 916 aa13.51□□□□□ -0.25
CDHR3-209ENST00000472116 EIF4A1P60842 406 aaKnown RBP13.51□□□□□ -0.25
CDHR3-209ENST00000472116 SH3TC2Q8TF17 1288 aa13.51□□□□□ -0.25
CDHR3-209ENST00000472116 GMLQ99445 158 aa13.51□□□□□ -0.25
CDHR3-209ENST00000472116 THUMPD2Q9BTF0 503 aaKnown RBP13.51□□□□□ -0.25
CDHR3-209ENST00000472116 PODXL2Q9NZ53 605 aa13.51□□□□□ -0.25
CDHR3-209ENST00000472116 STXBP5LQ9Y2K9 1186 aa13.51□□□□□ -0.25
CDHR3-209ENST00000472116 SOX1O00570 391 aaPredicted RBP13.5□□□□□ -0.25
CDHR3-209ENST00000472116 MMP14P50281 582 aa13.5□□□□□ -0.25
CDHR3-209ENST00000472116 RPS8P62241 208 aaKnown RBP13.5□□□□□ -0.25
CDHR3-209ENST00000472116 SF3B3Q15393 1217 aaKnown RBP13.5□□□□□ -0.25
CDHR3-209ENST00000472116 GPR153Q6NV75 609 aa13.5□□□□□ -0.25
CDHR3-209ENST00000472116 PODNQ7Z5L7 613 aa13.5□□□□□ -0.25
CDHR3-209ENST00000472116 DEFB123Q8N688 67 aa13.5□□□□□ -0.25
CDHR3-209ENST00000472116 FBXW7Q969H0 707 aa13.5□□□□□ -0.25
CDHR3-209ENST00000472116 ZFYVE28Q9HCC9 887 aa13.5□□□□□ -0.25
CDHR3-209ENST00000472116 UNCXA6NJT0 531 aa13.49□□□□□ -0.25
CDHR3-209ENST00000472116 ZBTB7BO15156 539 aaPredicted RBP13.49□□□□□ -0.25
CDHR3-209ENST00000472116 SASH1O94885 1247 aa13.49□□□□□ -0.25
CDHR3-209ENST00000472116 U2AF1L5P0DN76 240 aaPredicted RBP13.49□□□□□ -0.25
CDHR3-209ENST00000472116 HSPA5P11021 654 aaKnown RBP13.49□□□□□ -0.25
CDHR3-209ENST00000472116 EIF2S2P20042 333 aaKnown RBP13.49□□□□□ -0.25
CDHR3-209ENST00000472116 U2AF1Q01081 240 aaKnown RBP eCLIP13.49□□□□□ -0.25
CDHR3-209ENST00000472116 TAF1CQ15572 869 aaPredicted RBP13.49□□□□□ -0.25
CDHR3-209ENST00000472116 IREB2P48200 963 aaKnown RBP13.48□□□□□ -0.25
CDHR3-209ENST00000472116 PRMT2P55345 433 aa13.48□□□□□ -0.25
CDHR3-209ENST00000472116 AIMP1Q12904 312 aaKnown RBP13.48□□□□□ -0.25
CDHR3-209ENST00000472116 CNGB1Q14028 1251 aaPredicted RBP13.48□□□□□ -0.25
CDHR3-209ENST00000472116 MAP3K11Q16584 847 aa13.48□□□□□ -0.25
CDHR3-209ENST00000472116 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.48□□□□□ -0.25
CDHR3-209ENST00000472116 CLMNQ96JQ2 1002 aa13.48□□□□□ -0.25
CDHR3-209ENST00000472116 EVI5O60447 810 aa13.47□□□□□ -0.25
CDHR3-209ENST00000472116 GNRH1P01148 92 aa13.47□□□□□ -0.25
CDHR3-209ENST00000472116 SUPT20HL1Q3ZLR7 823 aa13.47□□□□□ -0.25
CDHR3-209ENST00000472116 FZD1Q9UP38 647 aa13.47□□□□□ -0.25
CDHR3-209ENST00000472116 ZSWIM8A7E2V4 1837 aa13.46□□□□□ -0.25
CDHR3-209ENST00000472116 HSP90B1P14625 803 aaKnown RBP13.46□□□□□ -0.25
CDHR3-209ENST00000472116 COPS6Q7L5N1 327 aa13.46□□□□□ -0.25
CDHR3-209ENST00000472116 SHISA4Q96DD7 197 aa13.46□□□□□ -0.25
CDHR3-209ENST00000472116 TIMELESSQ9UNS1 1208 aa13.46□□□□□ -0.25
CDHR3-209ENST00000472116 OTOFQ9HC10 1997 aa13.45□□□□□ -0.26
CDHR3-209ENST00000472116 XDHP47989 1333 aa13.45□□□□□ -0.26
CDHR3-209ENST00000472116 UNC80Q8N2C7 3258 aa13.45□□□□□ -0.26
CDHR3-209ENST00000472116 TESPA1A2RU30 521 aaPredicted RBP13.45□□□□□ -0.26
CDHR3-209ENST00000472116 CAP1Q01518 475 aa13.45□□□□□ -0.26
CDHR3-209ENST00000472116 ANKRD13AQ8IZ07 590 aa13.45□□□□□ -0.26
CDHR3-209ENST00000472116 ZNF428Q96B54 188 aa13.45□□□□□ -0.26
CDHR3-209ENST00000472116 FAM89AQ96GI7 184 aa13.45□□□□□ -0.26
CDHR3-209ENST00000472116 DEFB129Q9H1M3 183 aa13.45□□□□□ -0.26
CDHR3-209ENST00000472116 PPP2R3BQ9Y5P8 575 aa13.45□□□□□ -0.26
CDHR3-209ENST00000472116 COL4A1P02462 1669 aa13.44□□□□□ -0.26
CDHR3-209ENST00000472116 FARP2O94887 1054 aaPredicted RBP13.44□□□□□ -0.26
CDHR3-209ENST00000472116 ANXA1P04083 346 aa13.44□□□□□ -0.26
CDHR3-209ENST00000472116 ATP2B4P23634 1241 aa13.44□□□□□ -0.26
CDHR3-209ENST00000472116 GJA8P48165 433 aa13.44□□□□□ -0.26
CDHR3-209ENST00000472116 XAGE3Q8WTP9 111 aa13.44□□□□□ -0.26
CDHR3-209ENST00000472116 PTPN18Q99952 460 aa13.44□□□□□ -0.26
CDHR3-209ENST00000472116 PRDM6Q9NQX0 595 aa13.44□□□□□ -0.26
CDHR3-209ENST00000472116 BIN2Q9UBW5 565 aaPredicted RBP13.44□□□□□ -0.26
CDHR3-209ENST00000472116 STAP2Q9UGK3 403 aa13.44□□□□□ -0.26
CDHR3-209ENST00000472116 LAMA3Q16787 3333 aa13.44□□□□□ -0.26
CDHR3-209ENST00000472116 IRS4O14654 1257 aaPredicted RBP13.43□□□□□ -0.26
CDHR3-209ENST00000472116 MYO1BO43795 1136 aa13.43□□□□□ -0.26
CDHR3-209ENST00000472116 GJB1P08034 283 aa13.43□□□□□ -0.26
CDHR3-209ENST00000472116 HOXD10P28358 340 aa13.43□□□□□ -0.26
CDHR3-209ENST00000472116 MTFR1Q15390 333 aa13.43□□□□□ -0.26
CDHR3-209ENST00000472116 RTL5Q5HYW3 569 aaPredicted RBP13.43□□□□□ -0.26
CDHR3-209ENST00000472116 DACT2Q5SW24 774 aa13.43□□□□□ -0.26
CDHR3-209ENST00000472116 STRIP1Q5VSL9 837 aa13.43□□□□□ -0.26
CDHR3-209ENST00000472116 LRP10Q7Z4F1 713 aa13.43□□□□□ -0.26
CDHR3-209ENST00000472116 RNF208Q9H0X6 261 aa13.43□□□□□ -0.26
CDHR3-209ENST00000472116 SPEF2Q9C093 1822 aa13.43□□□□□ -0.26
CDHR3-209ENST00000472116 CCL15-CCL14A0A0B4J2E2 113 aa13.42□□□□□ -0.26
CDHR3-209ENST00000472116 UBXN2AP68543 259 aa13.42□□□□□ -0.26
CDHR3-209ENST00000472116 LACTBP83111 547 aaPredicted RBP13.42□□□□□ -0.26
CDHR3-209ENST00000472116 PDIA6Q15084 440 aa13.42□□□□□ -0.26
CDHR3-209ENST00000472116 DLGAP5Q15398 846 aa13.42□□□□□ -0.26
CDHR3-209ENST00000472116 CCL15Q16663 113 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 125.4 ms