RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 HNRNPH1P31943 449 aaKnown RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 NF2P35240 595 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 EIF5P55010 431 aaKnown RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 CFAP70Q5T0N1 1121 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 SLC4A10Q6U841 1118 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 ANKRD44Q8N8A2 993 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 ERCC4Q92889 916 aaPredicted RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 WNT2BQ93097 391 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 CENPHQ9H3R5 247 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 RBM28Q9NW13 759 aaKnown RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 NUP153P49790 1475 aaKnown RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 KIDINS220Q9ULH0 1771 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 RTL1A6NKG5 1358 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 ATP10AO60312 1499 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 ADGRL2O95490 1459 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 FRMD3A2A2Y4 597 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 PPP1R3GB7ZBB8 358 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 CCP110O43303 1012 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 VAMP4O75379 141 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 LARGE1O95461 756 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 CHMLP26374 656 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 SSR1P43307 286 aaKnown RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 ATP2B2Q01814 1243 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 STX1AQ16623 288 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 KRT24Q2M2I5 525 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 TWISTNBQ3B726 338 aaPredicted RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 NBPF20Q3BBV1 942 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 LRRC31Q6UY01 552 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 HDXQ7Z353 690 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 ERC1Q8IUD2 1116 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 RPAP2Q8IXW5 612 aaPredicted RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 PRPF38AQ8NAV1 312 aaKnown RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 N4BP2L2Q92802 583 aaPredicted RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 GOLGA1Q92805 767 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 UTP14AQ9BVJ6 771 aaKnown RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 SCAND2PQ9GZW5 306 aaPredicted RBP4.89□□□□□ -1.63
VPS50-210ENST00000471188 FAM107BQ9H098 131 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 NPHP3Q7Z494 1330 aa4.89□□□□□ -1.63
VPS50-210ENST00000471188 EIF2AK4Q9P2K8 1649 aaKnown RBP4.88□□□□□ -1.63
VPS50-210ENST00000471188 NUTM2FA1L443 756 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 SEMA3EO15041 775 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 PPFIA4O75335 1185 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 ERLIN1O75477 346 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 CAVIN2O95810 425 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 GNAI3P08754 354 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 CEP85Q6P2H3 762 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 RUFY3Q7L099 469 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 CDC37L1Q7L3B6 337 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 HOMEZQ8IX15 550 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 CEP57L1Q8IYX8 460 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 CCDC150Q8NCX0 1101 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 ARHGAP45Q92619 1136 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 UBXN6Q9BZV1 441 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 FAM204AQ9H8W3 233 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 SUGCTQ9HAC7 445 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 VEZTQ9HBM0 779 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 IFNKQ9P0W0 207 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 PUF60Q9UHX1 559 aaKnown RBP4.88□□□□□ -1.63
VPS50-210ENST00000471188 AKAP2Q9Y2D5 859 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 ALKQ9UM73 1620 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 TULP1O00294 542 aaPredicted RBP4.88□□□□□ -1.63
VPS50-210ENST00000471188 EBAG9O00559 213 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 HRO43593 1189 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 CCT5P48643 541 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 OS9Q13438 667 aaPredicted RBP4.88□□□□□ -1.63
VPS50-210ENST00000471188 SARM1Q6SZW1 724 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 KAT2BQ92831 832 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 DDX11Q96FC9 970 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 PLCD4Q9BRC7 762 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 TRAK1Q9UPV9 953 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 IL16Q14005 1332 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 ATP10BO94823 1461 aa4.88□□□□□ -1.63
VPS50-210ENST00000471188 GPATCH8Q9UKJ3 1502 aaKnown RBP4.88□□□□□ -1.63
VPS50-210ENST00000471188 CCDC151A5D8V7 595 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 KINO60870 393 aaKnown RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 TUBB4AP04350 444 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 IFIT2P09913 472 aaKnown RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 PAX7P23759 505 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 INPP5BP32019 993 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 PDE6BP35913 854 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 BCAMP50895 628 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 TRDNQ13061 729 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 NEDD9Q14511 834 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 IQCB1Q15051 598 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 CPLX2Q6PUV4 134 aaKnown RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 CTCFLQ8NI51 663 aaPredicted RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 SMARCC1Q92922 1105 aaPredicted RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 ZNF428Q96B54 188 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 JAKMIP1Q96N16 626 aaKnown RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 MEIS3Q99687 375 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 EPAS1Q99814 870 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 SDF4Q9BRK5 362 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 XPO4Q9C0E2 1151 aaKnown RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 NAT10Q9H0A0 1025 aaKnown RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 GGNBP2Q9H3C7 697 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 GNL3LQ9NVN8 582 aaKnown RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 ANO10Q9NW15 660 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 CAPN7Q9Y6W3 813 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 PHLPP2Q6ZVD8 1323 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 PLEKHD1A6NEE1 506 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms