RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 C1orf127Q8N9H9 656 aa8.25□□□□□ -1.09
CCDC88A-210ENST00000468534 TTC16Q8NEE8 873 aa8.25□□□□□ -1.09
CCDC88A-210ENST00000468534 FSCN2O14926 492 aa8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 DDX3YO15523 660 aaKnown RBP8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 PDGFAP04085 211 aa8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 PCSK2P16519 638 aa8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 PTPRAP18433 802 aa8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 CES1P23141 567 aa8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 NOM1Q5C9Z4 860 aaKnown RBP8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 GTF3C2Q8WUA4 911 aaPredicted RBP8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 PSMG3-AS1Q96PY0 264 aa8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 UBL7Q96S82 380 aaPredicted RBP8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 POP1Q99575 1024 aaKnown RBP8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 GGNBP2Q9H3C7 697 aa8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 GTF3C3Q9Y5Q9 886 aa8.24□□□□□ -1.09
CCDC88A-210ENST00000468534 TRPA1O75762 1119 aa8.23□□□□□ -1.09
CCDC88A-210ENST00000468534 Q6ZS46 218 aa8.23□□□□□ -1.09
CCDC88A-210ENST00000468534 RNF112Q9ULX5 631 aa8.23□□□□□ -1.09
CCDC88A-210ENST00000468534 RPLP1P05386 114 aaKnown RBP8.22□□□□□ -1.09
CCDC88A-210ENST00000468534 EIF1AXP47813 144 aaKnown RBP8.22□□□□□ -1.09
CCDC88A-210ENST00000468534 AAMPQ13685 434 aa8.22□□□□□ -1.09
CCDC88A-210ENST00000468534 DUOXA2Q1HG44 320 aa8.22□□□□□ -1.09
CCDC88A-210ENST00000468534 UBASH3BQ8TF42 649 aa8.22□□□□□ -1.09
CCDC88A-210ENST00000468534 KRTAP4-8Q9BYQ9 185 aa8.22□□□□□ -1.09
CCDC88A-210ENST00000468534 KLHL23Q8NBE8 558 aa8.21□□□□□ -1.1
CCDC88A-210ENST00000468534 FOXD4L4Q8WXT5 416 aaPredicted RBP8.21□□□□□ -1.1
CCDC88A-210ENST00000468534 HHIPQ96QV1 700 aa8.21□□□□□ -1.1
CCDC88A-210ENST00000468534 SEC31BQ9NQW1 1179 aa8.21□□□□□ -1.1
CCDC88A-210ENST00000468534 SALL4Q9UJQ4 1053 aa8.21□□□□□ -1.1
CCDC88A-210ENST00000468534 POLIQ9UNA4 740 aa8.21□□□□□ -1.1
CCDC88A-210ENST00000468534 RAXQ9Y2V3 346 aa8.21□□□□□ -1.1
CCDC88A-210ENST00000468534 CARNS1A5YM72 827 aa8.2□□□□□ -1.1
CCDC88A-210ENST00000468534 TMEM88BA6NKF7 163 aa8.2□□□□□ -1.1
CCDC88A-210ENST00000468534 ADAM11O75078 769 aa8.2□□□□□ -1.1
CCDC88A-210ENST00000468534 MZF1P28698 734 aaPredicted RBP8.2□□□□□ -1.1
CCDC88A-210ENST00000468534 CABP4P57796 275 aa8.2□□□□□ -1.1
CCDC88A-210ENST00000468534 KIAA1211Q6ZU35 1233 aa8.2□□□□□ -1.1
CCDC88A-210ENST00000468534 SLC7A3Q8WY07 619 aa8.2□□□□□ -1.1
CCDC88A-210ENST00000468534 KLHDC7BQ96G42 594 aa8.2□□□□□ -1.1
CCDC88A-210ENST00000468534 CEP41Q9BYV8 373 aa8.2□□□□□ -1.1
CCDC88A-210ENST00000468534 H3BRJ5 948 aa8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 DHX15O43143 795 aaKnown RBP8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 SSFA2P28290 1259 aa8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 SSTR4P31391 388 aa8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 NLRP12P59046 1061 aa8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 ARMC10Q8N2F6 343 aa8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 UTP4Q969X6 686 aaKnown RBP8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 ADAM19Q9H013 955 aa8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 PCMTD2Q9NV79 361 aa8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 STOML1Q9UBI4 398 aa8.19□□□□□ -1.1
CCDC88A-210ENST00000468534 PDE2AO00408 941 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-210ENST00000468534 TM4SF5O14894 197 aa8.18□□□□□ -1.1
CCDC88A-210ENST00000468534 XKR5Q6UX68 686 aa8.18□□□□□ -1.1
CCDC88A-210ENST00000468534 CHRDQ9H2X0 955 aa8.18□□□□□ -1.1
CCDC88A-210ENST00000468534 DZANK1Q9NVP4 752 aa8.18□□□□□ -1.1
CCDC88A-210ENST00000468534 NFKBIEO00221 500 aa8.17□□□□□ -1.1
CCDC88A-210ENST00000468534 PIP4K2BP78356 416 aa8.17□□□□□ -1.1
CCDC88A-210ENST00000468534 EREGO14944 169 aa8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 SART1O43290 800 aaKnown RBP8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 PHACTR2O75167 634 aa8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 ABL1P00519 1130 aa8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 IGLV1-40P01703 118 aa8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 ALKBH2Q6NS38 261 aa8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 OSMRQ99650 979 aa8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 ANO2Q9NQ90 1003 aa8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 PODXL2Q9NZ53 605 aa8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 FOXD3Q9UJU5 478 aaPredicted RBP8.16□□□□□ -1.1
CCDC88A-210ENST00000468534 HGSNATQ68CP4 663 aa8.15□□□□□ -1.1
CCDC88A-210ENST00000468534 PMEPA1Q969W9 287 aa8.15□□□□□ -1.1
CCDC88A-210ENST00000468534 C1orf115Q9H7X2 142 aa8.15□□□□□ -1.1
CCDC88A-210ENST00000468534 HMX2A2RU54 273 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 GSC2O15499 205 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 TNFRSF21O75509 655 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 TGFB1P01137 390 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 ZNF211Q13398 564 aaPredicted RBP8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 UVSSAQ2YD98 709 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 TRIM42Q8IWZ5 723 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 ASAP3Q8TDY4 903 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 WNT8BQ93098 351 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 FAM46AQ96IP4 442 aaKnown RBP8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 MYRFLQ96LU7 910 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 ZKSCAN3Q9BRR0 538 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 RUSC1Q9BVN2 902 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 KCNF1Q9H3M0 494 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 C7orf69Q9H7B7 122 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 OSGEPQ9NPF4 335 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 SOX13Q9UN79 622 aa8.14□□□□□ -1.11
CCDC88A-210ENST00000468534 PPP1R15AO75807 674 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-210ENST00000468534 FAM13AO94988 1023 aa8.13□□□□□ -1.11
CCDC88A-210ENST00000468534 ARL4DP49703 201 aa8.13□□□□□ -1.11
CCDC88A-210ENST00000468534 SLC51AQ86UW1 340 aa8.13□□□□□ -1.11
CCDC88A-210ENST00000468534 TMEM102Q8N9M5 508 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-210ENST00000468534 MTMR7Q9Y216 660 aa8.13□□□□□ -1.11
CCDC88A-210ENST00000468534 BMP3P12645 472 aa8.12□□□□□ -1.11
CCDC88A-210ENST00000468534 PREPP48147 710 aa8.12□□□□□ -1.11
CCDC88A-210ENST00000468534 C19orf57Q0VDD7 668 aa8.12□□□□□ -1.11
CCDC88A-210ENST00000468534 NFIAQ12857 509 aa8.12□□□□□ -1.11
CCDC88A-210ENST00000468534 PHLDB3Q6NSJ2 640 aa8.12□□□□□ -1.11
CCDC88A-210ENST00000468534 FDX2Q6P4F2 183 aa8.12□□□□□ -1.11
CCDC88A-210ENST00000468534 SNX29Q8TEQ0 813 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms