RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 PTPDC1A2A3K4 754 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 CYP21A2P08686 494 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 CYP2C19P33261 490 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 TPM4P67936 248 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 SLC20A2Q08357 652 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 PROSER3Q2NL68 480 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 SRRTQ9BXP5 876 aaKnown RBP8.5□□□□□ -1.05
USP48-206ENST00000464577 TMEM51Q9NW97 253 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 RTEL1Q9NZ71 1219 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 TBX22Q9Y458 520 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 FHOD1Q9Y613 1164 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 ADAMTS7Q9UKP4 1686 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 CTDNEP1O95476 244 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 SFPQP23246 707 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP48-206ENST00000464577 FGD1P98174 961 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 FAM69CQ0P6D2 419 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 MCMDC2Q4G0Z9 681 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 AMOTQ4VCS5 1084 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 PLEKHO1Q53GL0 409 aaPredicted RBP8.5□□□□□ -1.05
USP48-206ENST00000464577 ADALQ6DHV7 355 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 ARMCX5Q6P1M9 558 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 ZNF530Q6P9A1 599 aaPredicted RBP8.5□□□□□ -1.05
USP48-206ENST00000464577 DHX32Q7L7V1 743 aaKnown RBP8.5□□□□□ -1.05
USP48-206ENST00000464577 NOL10Q9BSC4 688 aaKnown RBP8.5□□□□□ -1.05
USP48-206ENST00000464577 COPRSQ9NQ92 184 aa8.5□□□□□ -1.05
USP48-206ENST00000464577 ATF5Q9Y2D1 282 aaPredicted RBP8.5□□□□□ -1.05
USP48-206ENST00000464577 RNMTO43148 476 aaKnown RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 ATP8B1O43520 1251 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 ZRANB2O95218 330 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP48-206ENST00000464577 GTF2E1P29083 439 aaPredicted RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 ME1P48163 572 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 CLCN6P51797 869 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 CEBPZQ03701 1054 aaKnown RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 FTOQ9C0B1 505 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP48-206ENST00000464577 XPO4Q9C0E2 1151 aaKnown RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 DDX21Q9NR30 783 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP48-206ENST00000464577 ARGLU1Q9NWB6 273 aaPredicted RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 LAMA4Q16363 1823 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 PALLDQ8WX93 1383 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 TULP1O00294 542 aaPredicted RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 TULP2O00295 520 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 YEATS4O95619 227 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 TPM1P09493 284 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 PNMA6AP0CW24 399 aaPredicted RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 NLRP12P59046 1061 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 ETF1P62495 437 aaKnown RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 EXOSC10Q01780 885 aaKnown RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 ERCC6LQ2NKX8 1250 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 TNNI3KQ59H18 835 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 NBPF6Q5VWK0 638 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 SYT10Q6XYQ8 523 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 STOX1Q6ZVD7 989 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 TMC6Q7Z403 805 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 ILDR1Q86SU0 546 aaPredicted RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 FBXL16Q8N461 479 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 ABTB2Q8N961 1025 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 KCNG4Q8TDN1 519 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 ZNF274Q96GC6 653 aaPredicted RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 NBPF4Q96M43 638 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 HAUS7Q99871 368 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 KIAA1468Q9P260 1216 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 DBNLQ9UJU6 430 aaKnown RBP8.49□□□□□ -1.05
USP48-206ENST00000464577 PCDHA7Q9UN72 937 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 FPGT-TNNI3KV9GXZ4 949 aa8.49□□□□□ -1.05
USP48-206ENST00000464577 NEDD4P46934 1319 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 CAMTA1Q9Y6Y1 1673 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 PXDNQ92626 1479 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 IKBKBO14920 756 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 SMC2O95347 1197 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 ZRSR1Q15695 479 aaKnown RBP8.48□□□□□ -1.05
USP48-206ENST00000464577 FCHSD1Q86WN1 690 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 RGS22Q8NE09 1264 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 BBXQ8WY36 941 aaPredicted RBP8.48□□□□□ -1.05
USP48-206ENST00000464577 SLC26A8Q96RN1 970 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 SDF4Q9BRK5 362 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 DSCC1Q9BVC3 393 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 TSPYL1Q9H0U9 437 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 SIL1Q9H173 461 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 IFNKQ9P0W0 207 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 ORC3Q9UBD5 711 aaPredicted RBP8.48□□□□□ -1.05
USP48-206ENST00000464577 EID1Q9Y6B2 187 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 CARMIL3Q8ND23 1372 aa8.48□□□□□ -1.05
USP48-206ENST00000464577 MYO1BO43795 1136 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 IGKV5-2P06315 115 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 PLA2G4AP47712 749 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 RFX5P48382 616 aaPredicted RBP8.47□□□□□ -1.05
USP48-206ENST00000464577 IRX5P78411 483 aaPredicted RBP8.47□□□□□ -1.05
USP48-206ENST00000464577 PSME1Q06323 249 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 NCAPHQ15003 741 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 DPCR1Q3MIW9 517 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 ARHGAP29Q52LW3 1261 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 TMCO3Q6UWJ1 677 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 EDC3Q96F86 508 aaKnown RBP8.47□□□□□ -1.05
USP48-206ENST00000464577 UBXN6Q9BZV1 441 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 ST7Q9NRC1 585 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 HELLSQ9NRZ9 838 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 POLR3EQ9NVU0 708 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.47□□□□□ -1.05
USP48-206ENST00000464577 DNAI1Q9UI46 699 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 SLIT3O75094 1523 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms