RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 VPS33BQ9H267 617 aa20.98■□□□□ 0.95
COL7A1-202ENST00000422991 APBB1O00213 710 aa20.97■□□□□ 0.95
COL7A1-202ENST00000422991 LMNB1P20700 586 aa20.97■□□□□ 0.95
COL7A1-202ENST00000422991 AOC3Q16853 763 aa20.97■□□□□ 0.95
COL7A1-202ENST00000422991 WASHC4Q2M389 1173 aa20.97■□□□□ 0.95
COL7A1-202ENST00000422991 LPIN2Q92539 896 aa20.97■□□□□ 0.95
COL7A1-202ENST00000422991 GPR108Q9NPR9 543 aa20.97■□□□□ 0.95
COL7A1-202ENST00000422991 AKAP2Q9Y2D5 859 aa20.97■□□□□ 0.95
COL7A1-202ENST00000422991 PPIP5K2O43314 1243 aa20.96■□□□□ 0.95
COL7A1-202ENST00000422991 SLC5A1P13866 664 aa20.96■□□□□ 0.95
COL7A1-202ENST00000422991 TXNRD3Q86VQ6 643 aa20.96■□□□□ 0.95
COL7A1-202ENST00000422991 GCC1Q96CN9 775 aa20.96■□□□□ 0.95
COL7A1-202ENST00000422991 GPBP1L1Q9HC44 474 aaPredicted RBP20.96■□□□□ 0.95
COL7A1-202ENST00000422991 A0A1B0GUL7 405 aa20.95■□□□□ 0.94
COL7A1-202ENST00000422991 RIMBP2O15034 1052 aa20.95■□□□□ 0.94
COL7A1-202ENST00000422991 IFIT1P09914 478 aaKnown RBP20.95■□□□□ 0.94
COL7A1-202ENST00000422991 TNNI3KQ59H18 835 aa20.95■□□□□ 0.94
COL7A1-202ENST00000422991 SMC5Q8IY18 1101 aa20.95■□□□□ 0.94
COL7A1-202ENST00000422991 LRRCC1Q9C099 1032 aa20.95■□□□□ 0.94
COL7A1-202ENST00000422991 ZC3H12CQ9C0D7 883 aaKnown RBP20.95■□□□□ 0.94
COL7A1-202ENST00000422991 FPGT-TNNI3KV9GXZ4 949 aa20.95■□□□□ 0.94
COL7A1-202ENST00000422991 PSME4Q14997 1843 aa20.94■□□□□ 0.94
COL7A1-202ENST00000422991 C9orf131Q5VYM1 1079 aa20.94■□□□□ 0.94
COL7A1-202ENST00000422991 LARGE2Q8N3Y3 721 aa20.94■□□□□ 0.94
COL7A1-202ENST00000422991 IL1RAPL2Q9NP60 686 aa20.94■□□□□ 0.94
COL7A1-202ENST00000422991 ZNF646O15015 1829 aaPredicted RBP20.94■□□□□ 0.94
COL7A1-202ENST00000422991 MYH13Q9UKX3 1938 aa20.94■□□□□ 0.94
COL7A1-202ENST00000422991 ZNF526Q8TF50 670 aaPredicted RBP20.93■□□□□ 0.94
COL7A1-202ENST00000422991 RNF181Q9P0P0 153 aa20.93■□□□□ 0.94
COL7A1-202ENST00000422991 SCN9AQ15858 1988 aa20.93■□□□□ 0.94
COL7A1-202ENST00000422991 ADORA1P30542 326 aa20.92■□□□□ 0.94
COL7A1-202ENST00000422991 TIMM10P62072 90 aa20.92■□□□□ 0.94
COL7A1-202ENST00000422991 EAF2Q96CJ1 260 aaPredicted RBP20.92■□□□□ 0.94
COL7A1-202ENST00000422991 SMARCA5O60264 1052 aaPredicted RBP20.91■□□□□ 0.94
COL7A1-202ENST00000422991 GYG1P46976 350 aa20.91■□□□□ 0.94
COL7A1-202ENST00000422991 ZNF804AQ7Z570 1209 aa20.91■□□□□ 0.94
COL7A1-202ENST00000422991 NIM1KQ8IY84 436 aa20.91■□□□□ 0.94
COL7A1-202ENST00000422991 CLASRPQ8N2M8 674 aaKnown RBP20.91■□□□□ 0.94
COL7A1-202ENST00000422991 XAGE2Q96GT9 111 aa20.91■□□□□ 0.94
COL7A1-202ENST00000422991 FAM84BQ96KN1 310 aaPredicted RBP20.91■□□□□ 0.94
COL7A1-202ENST00000422991 KDM2BQ8NHM5 1336 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 ECE2O60344 883 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 C1QTNF8P60827 252 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 DOK7Q18PE1 504 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 FBXO33Q7Z6M2 555 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 AACSQ86V21 672 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 JDP2Q8WYK2 163 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 NEUROD6Q96NK8 337 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 COA1Q9GZY4 146 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 DBNDD1Q9H9R9 158 aa20.9■□□□□ 0.94
COL7A1-202ENST00000422991 TLR7Q9NYK1 1049 aaKnown RBP20.9■□□□□ 0.94
COL7A1-202ENST00000422991 HIBADHP31937 336 aaKnown RBP20.89■□□□□ 0.93
COL7A1-202ENST00000422991 CAVIN4Q5BKX8 364 aa20.89■□□□□ 0.93
COL7A1-202ENST00000422991 CCDC136Q96JN2 1154 aa20.89■□□□□ 0.93
COL7A1-202ENST00000422991 DBNDD2Q9BQY9 259 aa20.89■□□□□ 0.93
COL7A1-202ENST00000422991 PPP4R2Q9NY27 417 aa20.89■□□□□ 0.93
COL7A1-202ENST00000422991 DBNLQ9UJU6 430 aaKnown RBP20.89■□□□□ 0.93
COL7A1-202ENST00000422991 ZC3H4Q9UPT8 1303 aaKnown RBP20.88■□□□□ 0.93
COL7A1-202ENST00000422991 G3V3G9 751 aa20.88■□□□□ 0.93
COL7A1-202ENST00000422991 BCAMP50895 628 aa20.88■□□□□ 0.93
COL7A1-202ENST00000422991 DCAF8Q5TAQ9 597 aa20.88■□□□□ 0.93
COL7A1-202ENST00000422991 ANKRD45Q5TZF3 282 aa20.88■□□□□ 0.93
COL7A1-202ENST00000422991 CCDC8Q9H0W5 538 aaPredicted RBP20.88■□□□□ 0.93
COL7A1-202ENST00000422991 CD209Q9NNX6 404 aa20.88■□□□□ 0.93
COL7A1-202ENST00000422991 ZNRF3Q9ULT6 936 aa20.88■□□□□ 0.93
COL7A1-202ENST00000422991 YDJCA8MPS7 323 aa20.87■□□□□ 0.93
COL7A1-202ENST00000422991 FZD9O00144 591 aa20.87■□□□□ 0.93
COL7A1-202ENST00000422991 IL1R1P14778 569 aa20.87■□□□□ 0.93
COL7A1-202ENST00000422991 PHKA1P46020 1223 aa20.87■□□□□ 0.93
COL7A1-202ENST00000422991 NUCB1Q02818 461 aa20.87■□□□□ 0.93
COL7A1-202ENST00000422991 VPS37DQ86XT2 251 aa20.87■□□□□ 0.93
COL7A1-202ENST00000422991 IFIT2P09913 472 aaKnown RBP20.86■□□□□ 0.93
COL7A1-202ENST00000422991 CCDC102BQ68D86 513 aa20.86■□□□□ 0.93
COL7A1-202ENST00000422991 B4GALNT3Q6L9W6 998 aa20.86■□□□□ 0.93
COL7A1-202ENST00000422991 CENPQQ7L2Z9 268 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-202ENST00000422991 PODNQ7Z5L7 613 aa20.86■□□□□ 0.93
COL7A1-202ENST00000422991 TDRD7Q8NHU6 1098 aaKnown RBP20.86■□□□□ 0.93
COL7A1-202ENST00000422991 BCL11AQ9H165 835 aa20.86■□□□□ 0.93
COL7A1-202ENST00000422991 COL1A1P02452 1464 aaPredicted RBP20.86■□□□□ 0.93
COL7A1-202ENST00000422991 AKAP11Q9UKA4 1901 aa20.85■□□□□ 0.93
COL7A1-202ENST00000422991 GORABQ5T7V8 394 aa20.85■□□□□ 0.93
COL7A1-202ENST00000422991 ZBTB47Q9UFB7 747 aaPredicted RBP20.85■□□□□ 0.93
COL7A1-202ENST00000422991 ZNF541Q9H0D2 1346 aa20.84■□□□□ 0.93
COL7A1-202ENST00000422991 ZBTB22O15209 634 aa20.84■□□□□ 0.93
COL7A1-202ENST00000422991 CHD1LQ86WJ1 897 aa20.84■□□□□ 0.93
COL7A1-202ENST00000422991 ARID4AP29374 1257 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-202ENST00000422991 LNPKQ9C0E8 428 aa20.83■□□□□ 0.93
COL7A1-202ENST00000422991 KCNQ5Q9NR82 932 aa20.83■□□□□ 0.93
COL7A1-202ENST00000422991 GNL3LQ9NVN8 582 aaKnown RBP20.83■□□□□ 0.93
COL7A1-202ENST00000422991 IQSEC3Q9UPP2 1182 aaPredicted RBP20.83■□□□□ 0.93
COL7A1-202ENST00000422991 SALL3Q9BXA9 1300 aa20.82■□□□□ 0.92
COL7A1-202ENST00000422991 RAD17O75943 681 aa20.82■□□□□ 0.92
COL7A1-202ENST00000422991 EIF6P56537 245 aaKnown RBP20.82■□□□□ 0.92
COL7A1-202ENST00000422991 CXCL9Q07325 125 aa20.82■□□□□ 0.92
COL7A1-202ENST00000422991 CCDC158Q5M9N0 1113 aa20.82■□□□□ 0.92
COL7A1-202ENST00000422991 ZNF512BQ96KM6 892 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-202ENST00000422991 FAM205AQ6ZU69 1335 aa20.81■□□□□ 0.92
COL7A1-202ENST00000422991 KIF3CO14782 793 aa20.81■□□□□ 0.92
COL7A1-202ENST00000422991 SEMA3EO15041 775 aa20.81■□□□□ 0.92
COL7A1-202ENST00000422991 UQCRFS1P1P0C7P4 283 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms