RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 JMYQ8N9B5 988 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 IBTKQ9P2D0 1353 aaPredicted RBP10.66□□□□□ -0.7
LIG4-202ENST00000405925 C8orf76Q96K31 380 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 KLF18A0A0U1RQI7 1052 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 CREB3L3Q68CJ9 461 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 SIRT2Q8IXJ6 389 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 WASF1Q92558 559 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 TMX3Q96JJ7 454 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 SEC31BQ9NQW1 1179 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 MCM9Q9NXL9 1143 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 UBR1Q8IWV7 1749 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 AOX1Q06278 1338 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 RAD50Q92878 1312 aa10.66□□□□□ -0.7
LIG4-202ENST00000405925 NBPF26B4DH59 902 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 MYO1BO43795 1136 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 CYP19A1P11511 503 aaPredicted RBP10.65□□□□□ -0.7
LIG4-202ENST00000405925 HMGN5P82970 282 aaKnown RBP10.65□□□□□ -0.7
LIG4-202ENST00000405925 NBPF10Q6P3W6 841 aaKnown RBP10.65□□□□□ -0.7
LIG4-202ENST00000405925 CHST3Q7LGC8 479 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 NBPF15Q8N660 670 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 HDAC9Q9UKV0 1011 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 NRKQ7Z2Y5 1582 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 CPDO75976 1380 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 RPS6KA4O75676 772 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 SERPINB2P05120 415 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 ATP5JP18859 108 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 RNF214Q8ND24 703 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 APPBP2Q92624 585 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 ESR2Q92731 530 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 GYG1P46976 350 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 ERFEQ4G0M1 354 aa10.65□□□□□ -0.7
LIG4-202ENST00000405925 RBM26Q5T8P6 1007 aaKnown RBP10.65□□□□□ -0.7
LIG4-202ENST00000405925 USP32Q8NFA0 1604 aa10.65□□□□□ -0.71
LIG4-202ENST00000405925 SGSM2O43147 1006 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 GSPT1P15170 499 aaKnown RBP10.64□□□□□ -0.71
LIG4-202ENST00000405925 MCM4P33991 863 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 SUSD4Q5VX71 490 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 USP26Q9BXU7 913 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 ITSN1Q15811 1721 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 METAP2P50579 478 aaKnown RBP eCLIP10.64□□□□□ -0.71
LIG4-202ENST00000405925 WTAPQ15007 396 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 SPATA32Q96LK8 384 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 FEZ1Q99689 392 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 VEZTQ9HBM0 779 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 ORC3Q9UBD5 711 aaPredicted RBP10.64□□□□□ -0.71
LIG4-202ENST00000405925 NOL7Q9UMY1 257 aaKnown RBP10.64□□□□□ -0.71
LIG4-202ENST00000405925 CPA1P15085 419 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 GNAT2P19087 354 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 SSFA2P28290 1259 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 CHRNDQ07001 517 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 SPATA5Q8NB90 893 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 SEC63Q9UGP8 760 aaKnown RBP10.64□□□□□ -0.71
LIG4-202ENST00000405925 SPATA31A5Q5VU36 1347 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 SPATA31A7Q8IWB4 1347 aa10.64□□□□□ -0.71
LIG4-202ENST00000405925 GPAA1O43292 621 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 PDE8BO95263 885 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 PDE6BP35913 854 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 IARSP41252 1262 aaKnown RBP10.63□□□□□ -0.71
LIG4-202ENST00000405925 TTLL12Q14166 644 aaPredicted RBP10.63□□□□□ -0.71
LIG4-202ENST00000405925 MPNDQ8N594 471 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 KRT23Q9C075 422 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 KAT14Q9H8E8 782 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 ARMT1Q9H993 441 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 DBNLQ9UJU6 430 aaKnown RBP10.63□□□□□ -0.71
LIG4-202ENST00000405925 GJB2P29033 226 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 ALDH1B1P30837 517 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 TXLNAP40222 546 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 EPHA10Q5JZY3 1008 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 Q6ZUG5 572 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 SYNE4Q8N205 404 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 CABP5Q9NP86 173 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 HELLSQ9NRZ9 838 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 CFAP45Q9UL16 551 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 PRC1O43663 620 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 PLCG2P16885 1265 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 BCAMP50895 628 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 CCDC102BQ68D86 513 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 LARGE2Q8N3Y3 721 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 WDR66Q8TBY9 1149 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 CNNM2Q9H8M5 875 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 VAT1LQ9HCJ6 419 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 TLR7Q9NYK1 1049 aaKnown RBP10.63□□□□□ -0.71
LIG4-202ENST00000405925 TSPY3P0CV98 308 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 TSPY8P0CW00 308 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 ADORA1P30542 326 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 PTPN12Q05209 780 aaKnown RBP10.63□□□□□ -0.71
LIG4-202ENST00000405925 SMIM5Q71RC9 77 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 C2CD5Q86YS7 1000 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 FBXO3Q9UK99 471 aa10.63□□□□□ -0.71
LIG4-202ENST00000405925 H7C1W4 665 aa10.62□□□□□ -0.71
LIG4-202ENST00000405925 ZBTB43O43298 467 aa10.62□□□□□ -0.71
LIG4-202ENST00000405925 PDIA4P13667 645 aaKnown RBP10.62□□□□□ -0.71
LIG4-202ENST00000405925 TEX11Q8IYF3 940 aa10.62□□□□□ -0.71
LIG4-202ENST00000405925 CDK5RAP3Q96JB5 506 aa10.62□□□□□ -0.71
LIG4-202ENST00000405925 PHKA1P46020 1223 aa10.62□□□□□ -0.71
LIG4-202ENST00000405925 SSRP1Q08945 709 aaKnown RBP10.62□□□□□ -0.71
LIG4-202ENST00000405925 CLEC4GQ6UXB4 293 aa10.62□□□□□ -0.71
LIG4-202ENST00000405925 TTLL11Q8NHH1 800 aa10.62□□□□□ -0.71
LIG4-202ENST00000405925 SLC26A6Q9BXS9 759 aa10.62□□□□□ -0.71
LIG4-202ENST00000405925 ZNF532Q9HCE3 1301 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms