RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 CCDC85AQ96PX6 553 aaPredicted RBP27.49■■□□□ 1.99
VPS16-201ENST00000380443 ZNF652Q9Y2D9 606 aa27.49■■□□□ 1.99
VPS16-201ENST00000380443 RTL9Q8NET4 1388 aa27.49■■□□□ 1.99
VPS16-201ENST00000380443 LRP5O75197 1615 aa27.48■■□□□ 1.99
VPS16-201ENST00000380443 PDE8BO95263 885 aa27.48■■□□□ 1.99
VPS16-201ENST00000380443 GJB2P29033 226 aa27.48■■□□□ 1.99
VPS16-201ENST00000380443 TTF1Q15361 905 aaPredicted RBP27.48■■□□□ 1.99
VPS16-201ENST00000380443 TMEM87AQ8NBN3 555 aa27.48■■□□□ 1.99
VPS16-201ENST00000380443 CYP21A2P08686 494 aa27.48■■□□□ 1.99
VPS16-201ENST00000380443 FKBP4Q02790 459 aaKnown RBP eCLIP27.48■■□□□ 1.99
VPS16-201ENST00000380443 ITPK1Q13572 414 aa27.48■■□□□ 1.99
VPS16-201ENST00000380443 CTNNA3Q9UI47 895 aa27.48■■□□□ 1.99
VPS16-201ENST00000380443 TOB2Q14106 344 aaPredicted RBP27.47■■□□□ 1.99
VPS16-201ENST00000380443 CLEC4GQ6UXB4 293 aa27.47■■□□□ 1.99
VPS16-201ENST00000380443 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.47■■□□□ 1.995e-6■■■□□ 19
VPS16-201ENST00000380443 MAST3O60307 1309 aa27.47■■□□□ 1.99
VPS16-201ENST00000380443 SBF2Q86WG5 1849 aa27.46■■□□□ 1.99
VPS16-201ENST00000380443 UQCRFS1P1P0C7P4 283 aa27.46■■□□□ 1.99
VPS16-201ENST00000380443 HSPD1P10809 573 aaKnown RBP27.46■■□□□ 1.99
VPS16-201ENST00000380443 NCLP19338 710 aaKnown RBP27.46■■□□□ 1.99
VPS16-201ENST00000380443 BAG6P46379 1132 aa27.46■■□□□ 1.99
VPS16-201ENST00000380443 FOXD4L5Q5VV16 416 aaPredicted RBP27.46■■□□□ 1.99
VPS16-201ENST00000380443 FOXD4L4Q8WXT5 416 aaPredicted RBP27.46■■□□□ 1.99
VPS16-201ENST00000380443 CHMP4CQ96CF2 233 aa27.46■■□□□ 1.99
VPS16-201ENST00000380443 BCL11BQ9C0K0 894 aaPredicted RBP27.46■■□□□ 1.99
VPS16-201ENST00000380443 SUSD4Q5VX71 490 aa27.46■■□□□ 1.99
VPS16-201ENST00000380443 F13A1P00488 732 aa27.45■■□□□ 1.98
VPS16-201ENST00000380443 CSPP1Q1MSJ5 1256 aa27.45■■□□□ 1.98
VPS16-201ENST00000380443 APPBP2Q92624 585 aa27.45■■□□□ 1.98
VPS16-201ENST00000380443 LARP6Q9BRS8 491 aaKnown RBP27.45■■□□□ 1.98
VPS16-201ENST00000380443 BRPF3Q9ULD4 1205 aa27.45■■□□□ 1.98
VPS16-201ENST00000380443 PUM3Q15397 648 aaKnown RBP27.44■■□□□ 1.98
VPS16-201ENST00000380443 GPT2Q8TD30 523 aa27.44■■□□□ 1.98
VPS16-201ENST00000380443 LPIN2Q92539 896 aa27.44■■□□□ 1.98
VPS16-201ENST00000380443 CCDC152Q4G0S7 254 aa27.44■■□□□ 1.98
VPS16-201ENST00000380443 CAVIN1Q6NZI2 390 aaKnown RBP27.44■■□□□ 1.98
VPS16-201ENST00000380443 DHX32Q7L7V1 743 aaKnown RBP27.44■■□□□ 1.98
VPS16-201ENST00000380443 TNS1Q9HBL0 1735 aaKnown RBP27.44■■□□□ 1.98
VPS16-201ENST00000380443 TAF6LQ9Y6J9 622 aa27.44■■□□□ 1.98
VPS16-201ENST00000380443 COL5A3P25940 1745 aaPredicted RBP27.43■■□□□ 1.98
VPS16-201ENST00000380443 APBA3O96018 575 aa27.43■■□□□ 1.98
VPS16-201ENST00000380443 ST3GAL1Q11201 340 aa27.43■■□□□ 1.98
VPS16-201ENST00000380443 SYAP1Q96A49 352 aaPredicted RBP27.43■■□□□ 1.98
VPS16-201ENST00000380443 ARID4AP29374 1257 aaPredicted RBP27.42■■□□□ 1.98
VPS16-201ENST00000380443 ZAP70P43403 619 aa27.42■■□□□ 1.98
VPS16-201ENST00000380443 NHSQ6T4R5 1651 aa27.42■■□□□ 1.98
VPS16-201ENST00000380443 CHGBP05060 677 aa27.41■■□□□ 1.98
VPS16-201ENST00000380443 ZSCAN23Q3MJ62 389 aa27.41■■□□□ 1.98
VPS16-201ENST00000380443 KLHL34Q8N239 644 aa27.41■■□□□ 1.98
VPS16-201ENST00000380443 MTMR6Q9Y217 621 aa27.41■■□□□ 1.98
VPS16-201ENST00000380443 LAMB2P55268 1798 aa27.41■■□□□ 1.98
VPS16-201ENST00000380443 FGFR2P21802 821 aa27.41■■□□□ 1.98
VPS16-201ENST00000380443 FBXL16Q8N461 479 aa27.41■■□□□ 1.98
VPS16-201ENST00000380443 OSBP2Q969R2 916 aa27.41■■□□□ 1.98
VPS16-201ENST00000380443 MYH14Q7Z406 1995 aaKnown RBP27.4■■□□□ 1.98
VPS16-201ENST00000380443 NECAB1Q8N987 351 aa27.4■■□□□ 1.98
VPS16-201ENST00000380443 AGXT2Q9BYV1 514 aa27.4■■□□□ 1.98
VPS16-201ENST00000380443 ARAP2Q8WZ64 1704 aa27.4■■□□□ 1.98
VPS16-201ENST00000380443 CNTNAP4Q9C0A0 1308 aa27.39■■□□□ 1.98
VPS16-201ENST00000380443 M0R2C6 588 aa27.39■■□□□ 1.98
VPS16-201ENST00000380443 NTSR2O95665 410 aa27.39■■□□□ 1.98
VPS16-201ENST00000380443 SLC5A1P13866 664 aa27.39■■□□□ 1.98
VPS16-201ENST00000380443 Q6ZUG5 572 aa27.39■■□□□ 1.98
VPS16-201ENST00000380443 GAS2L3Q86XJ1 694 aa27.39■■□□□ 1.98
VPS16-201ENST00000380443 MPHOSPH8Q99549 860 aa27.39■■□□□ 1.98
VPS16-201ENST00000380443 LLPHQ9BRT6 129 aaKnown RBP27.39■■□□□ 1.98
VPS16-201ENST00000380443 NIP7Q9Y221 180 aaKnown RBP eCLIP27.39■■□□□ 1.98
VPS16-201ENST00000380443 KCNQ2O43526 872 aa27.39■■□□□ 1.97
VPS16-201ENST00000380443 SCARF1Q14162 830 aa27.39■■□□□ 1.97
VPS16-201ENST00000380443 WASHC4Q2M389 1173 aa27.39■■□□□ 1.97
VPS16-201ENST00000380443 LARP1BQ659C4 914 aaKnown RBP27.39■■□□□ 1.97
VPS16-201ENST00000380443 GTF3C6Q969F1 213 aa27.39■■□□□ 1.97
VPS16-201ENST00000380443 BCORQ6W2J9 1755 aa27.39■■□□□ 1.97
VPS16-201ENST00000380443 MYH7P12883 1935 aa27.38■■□□□ 1.97
VPS16-201ENST00000380443 MCAMP43121 646 aa27.38■■□□□ 1.97
VPS16-201ENST00000380443 EXOSC10Q01780 885 aaKnown RBP27.38■■□□□ 1.97
VPS16-201ENST00000380443 DEFB132Q7Z7B7 95 aa27.38■■□□□ 1.97
VPS16-201ENST00000380443 AKAP11Q9UKA4 1901 aa27.38■■□□□ 1.97
VPS16-201ENST00000380443 UBE3CQ15386 1083 aa27.37■■□□□ 1.97
VPS16-201ENST00000380443 RC3H1Q5TC82 1133 aaKnown RBP27.37■■□□□ 1.97
VPS16-201ENST00000380443 USP48Q86UV5 1035 aa27.37■■□□□ 1.97
VPS16-201ENST00000380443 E7EWF7 191 aa27.37■■□□□ 1.97
VPS16-201ENST00000380443 HCLS1P14317 486 aaPredicted RBP27.37■■□□□ 1.97
VPS16-201ENST00000380443 IGHMBP2P38935 993 aaKnown RBP27.37■■□□□ 1.97
VPS16-201ENST00000380443 IMMTQ16891 758 aaKnown RBP27.37■■□□□ 1.97
VPS16-201ENST00000380443 CCDC102BQ68D86 513 aa27.37■■□□□ 1.97
VPS16-201ENST00000380443 STOX1Q6ZVD7 989 aa27.37■■□□□ 1.97
VPS16-201ENST00000380443 ADD2P35612 726 aa27.36■■□□□ 1.97
VPS16-201ENST00000380443 FGD1P98174 961 aa27.36■■□□□ 1.97
VPS16-201ENST00000380443 DDX60Q8IY21 1712 aaKnown RBP27.36■■□□□ 1.97
VPS16-201ENST00000380443 PHF14O94880 888 aa27.35■■□□□ 1.97
VPS16-201ENST00000380443 TCEANC2Q96MN5 208 aa27.35■■□□□ 1.97
VPS16-201ENST00000380443 PFKFB2O60825 505 aa27.34■■□□□ 1.97
VPS16-201ENST00000380443 EN1Q05925 392 aaPredicted RBP27.34■■□□□ 1.97
VPS16-201ENST00000380443 PLSCR1O15162 318 aa27.34■■□□□ 1.97
VPS16-201ENST00000380443 COL9A3Q14050 684 aaPredicted RBP27.34■■□□□ 1.97
VPS16-201ENST00000380443 PTF1AQ7RTS3 328 aa27.34■■□□□ 1.97
VPS16-201ENST00000380443 UBE2HP62256 183 aa27.33■■□□□ 1.97
VPS16-201ENST00000380443 SLFNL1Q499Z3 407 aa27.33■■□□□ 1.97
VPS16-201ENST00000380443 CHAMP1Q96JM3 812 aa27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms