RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 AK7Q96M32 723 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 LMBRD1Q9NUN5 540 aa14.32□□□□□ -0.12
USP3-202ENST00000380324 COL4A1P02462 1669 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 A0A0G2JLW4 131 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 HSPD1P10809 573 aaKnown RBP14.31□□□□□ -0.12
USP3-202ENST00000380324 PHKA1P46020 1223 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 PUM3Q15397 648 aaKnown RBP14.31□□□□□ -0.12
USP3-202ENST00000380324 CCDC152Q4G0S7 254 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 ZSCAN31Q96LW9 406 aaPredicted RBP14.31□□□□□ -0.12
USP3-202ENST00000380324 NEK1Q96PY6 1258 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 WDR33Q9C0J8 1336 aaKnown RBP14.31□□□□□ -0.12
USP3-202ENST00000380324 GOLGA6L3A6NEY3 463 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 NCLP19338 710 aaKnown RBP14.31□□□□□ -0.12
USP3-202ENST00000380324 GJB2P29033 226 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 TOB2Q14106 344 aaPredicted RBP14.31□□□□□ -0.12
USP3-202ENST00000380324 KLHL40Q2TBA0 621 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 TSGA10IPQ3SY00 556 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 DSCC1Q9BVC3 393 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 MROH5Q6ZUA9 1318 aa14.31□□□□□ -0.12
USP3-202ENST00000380324 STK3Q13188 491 aa14.3□□□□□ -0.12
USP3-202ENST00000380324 LRRFIP1Q32MZ4 808 aaKnown RBP14.3□□□□□ -0.12
USP3-202ENST00000380324 CCDC102BQ68D86 513 aa14.3□□□□□ -0.12
USP3-202ENST00000380324 STOX1Q6ZVD7 989 aa14.3□□□□□ -0.12
USP3-202ENST00000380324 BRPF3Q9ULD4 1205 aa14.3□□□□□ -0.12
USP3-202ENST00000380324 ANKRD1Q15327 319 aa14.3□□□□□ -0.12
USP3-202ENST00000380324 LRRC2Q9BYS8 371 aa14.3□□□□□ -0.12
USP3-202ENST00000380324 CNTNAP4Q9C0A0 1308 aa14.3□□□□□ -0.12
USP3-202ENST00000380324 SYT1P21579 422 aa14.29□□□□□ -0.12
USP3-202ENST00000380324 SBF2Q86WG5 1849 aa14.29□□□□□ -0.12
USP3-202ENST00000380324 GNPATO15228 680 aa14.29□□□□□ -0.12
USP3-202ENST00000380324 STX6O43752 255 aa14.29□□□□□ -0.12
USP3-202ENST00000380324 IDH1O75874 414 aaKnown RBP14.29□□□□□ -0.12
USP3-202ENST00000380324 ZFYP08048 801 aaPredicted RBP14.29□□□□□ -0.12
USP3-202ENST00000380324 IGHMBP2P38935 993 aaKnown RBP14.29□□□□□ -0.12
USP3-202ENST00000380324 ERFEQ4G0M1 354 aa14.29□□□□□ -0.12
USP3-202ENST00000380324 TTLL5Q6EMB2 1281 aa14.29□□□□□ -0.12
USP3-202ENST00000380324 CAVIN1Q6NZI2 390 aaKnown RBP14.29□□□□□ -0.12
USP3-202ENST00000380324 LPIN2Q92539 896 aa14.29□□□□□ -0.12
USP3-202ENST00000380324 PUS7LQ9H0K6 701 aaKnown RBP14.29□□□□□ -0.12
USP3-202ENST00000380324 GDPD2Q9HCC8 539 aa14.29□□□□□ -0.12
USP3-202ENST00000380324 CCNL1Q9UK58 526 aaPredicted RBP14.29□□□□□ -0.12
USP3-202ENST00000380324 HSP90B1P14625 803 aaKnown RBP14.28□□□□□ -0.12
USP3-202ENST00000380324 HSPA1LP34931 641 aa14.28□□□□□ -0.12
USP3-202ENST00000380324 FGD1P98174 961 aa14.28□□□□□ -0.12
USP3-202ENST00000380324 Q6ZUG5 572 aa14.28□□□□□ -0.12
USP3-202ENST00000380324 APPBP2Q92624 585 aa14.28□□□□□ -0.12
USP3-202ENST00000380324 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.28□□□□□ -0.121e-6■■■□□ 15.4
USP3-202ENST00000380324 SRP68Q9UHB9 627 aaKnown RBP14.28□□□□□ -0.12
USP3-202ENST00000380324 AFF2P51816 1311 aa14.28□□□□□ -0.12
USP3-202ENST00000380324 TAF1LQ8IZX4 1826 aa14.28□□□□□ -0.12
USP3-202ENST00000380324 FSD2A1L4K1 749 aa14.27□□□□□ -0.12
USP3-202ENST00000380324 SLC5A1P13866 664 aa14.27□□□□□ -0.12
USP3-202ENST00000380324 L1TD1Q5T7N2 865 aaKnown RBP14.27□□□□□ -0.12
USP3-202ENST00000380324 TBC1D9BQ66K14 1250 aa14.27□□□□□ -0.12
USP3-202ENST00000380324 CLEC4GQ6UXB4 293 aa14.27□□□□□ -0.12
USP3-202ENST00000380324 C3orf67Q6ZVT6 689 aa14.27□□□□□ -0.12
USP3-202ENST00000380324 TICAM2Q86XR7 235 aa14.27□□□□□ -0.12
USP3-202ENST00000380324 GJD4Q96KN9 370 aaPredicted RBP14.27□□□□□ -0.12
USP3-202ENST00000380324 PIH1D3Q9NQM4 214 aaKnown RBP14.27□□□□□ -0.12
USP3-202ENST00000380324 ZSCAN22P10073 491 aaPredicted RBP14.27□□□□□ -0.13
USP3-202ENST00000380324 FGFR2P21802 821 aa14.27□□□□□ -0.13
USP3-202ENST00000380324 ARID4AP29374 1257 aaPredicted RBP14.27□□□□□ -0.13
USP3-202ENST00000380324 HAND2P61296 217 aa14.27□□□□□ -0.13
USP3-202ENST00000380324 SLC9C2Q5TAH2 1124 aa14.27□□□□□ -0.13
USP3-202ENST00000380324 A0A1B0GUL6 1792 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 VPS37CA5D8V6 355 aaPredicted RBP14.26□□□□□ -0.13
USP3-202ENST00000380324 FOXP2O15409 715 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 GPAA1O43292 621 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 GTF2E1P29083 439 aaPredicted RBP14.26□□□□□ -0.13
USP3-202ENST00000380324 GPT2Q8TD30 523 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 BRF1Q92994 677 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 LY75O60449 1722 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 RTL9Q8NET4 1388 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 E7EWF7 191 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 RASGRF1Q13972 1273 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 AMIGO3Q86WK7 504 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 CERKQ8TCT0 537 aa14.26□□□□□ -0.13
USP3-202ENST00000380324 ZNF512BQ96KM6 892 aaPredicted RBP14.26□□□□□ -0.13
USP3-202ENST00000380324 ADD2P35612 726 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 CHRNDQ07001 517 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 TTF1Q15361 905 aaPredicted RBP14.25□□□□□ -0.13
USP3-202ENST00000380324 BCL2L12Q9HB09 334 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 RBM27Q9P2N5 1060 aaKnown RBP14.25□□□□□ -0.13
USP3-202ENST00000380324 DOCK2Q92608 1830 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 C4AP0C0L4 1744 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 C4BP0C0L5 1744 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 PHF14O94880 888 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 F13A1P00488 732 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 UQCRFS1P1P0C7P4 283 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 CHST3Q7LGC8 479 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 SPATA5Q8NB90 893 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 CDC5LQ99459 802 aaKnown RBP14.25□□□□□ -0.13
USP3-202ENST00000380324 ALDH8A1Q9H2A2 487 aaPredicted RBP14.25□□□□□ -0.13
USP3-202ENST00000380324 WWC3Q9ULE0 1092 aa14.25□□□□□ -0.13
USP3-202ENST00000380324 NSFL1CQ9UNZ2 370 aaKnown RBP14.25□□□□□ -0.13
USP3-202ENST00000380324 COL24A1Q17RW2 1714 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 ZPR1O75312 459 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 HMGB1P09429 215 aaKnown RBP14.24□□□□□ -0.13
USP3-202ENST00000380324 TPRNQ4KMQ1 711 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 GAS2L3Q86XJ1 694 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms