RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 BSDC1Q9NW68 430 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-202ENST00000372405 SLC5A1P13866 664 aa16.6■□□□□ 0.25
PTPRF-202ENST00000372405 MCMDC2Q4G0Z9 681 aa16.6■□□□□ 0.25
PTPRF-202ENST00000372405 ZMYM1Q5SVZ6 1142 aa16.6■□□□□ 0.25
PTPRF-202ENST00000372405 RNF113AO15541 343 aaKnown RBP16.59■□□□□ 0.25
PTPRF-202ENST00000372405 AKT1S1Q96B36 256 aa16.59■□□□□ 0.25
PTPRF-202ENST00000372405 CYP2E1P05181 493 aaPredicted RBP16.58■□□□□ 0.25
PTPRF-202ENST00000372405 PRR5LQ6MZQ0 368 aa16.58■□□□□ 0.25
PTPRF-202ENST00000372405 MINPP1Q9UNW1 487 aa16.58■□□□□ 0.25
PTPRF-202ENST00000372405 RGPD3A6NKT7 1758 aaPredicted RBP16.58■□□□□ 0.25
PTPRF-202ENST00000372405 RGPD4Q7Z3J3 1758 aa16.58■□□□□ 0.25
PTPRF-202ENST00000372405 NBR1Q14596 966 aa16.58■□□□□ 0.24
PTPRF-202ENST00000372405 ADCK5Q3MIX3 580 aa16.58■□□□□ 0.24
PTPRF-202ENST00000372405 CREB3L3Q68CJ9 461 aa16.58■□□□□ 0.24
PTPRF-202ENST00000372405 CNBD1Q8NA66 436 aa16.58■□□□□ 0.24
PTPRF-202ENST00000372405 HELLSQ9NRZ9 838 aa16.58■□□□□ 0.24
PTPRF-202ENST00000372405 TAF6LQ9Y6J9 622 aa16.58■□□□□ 0.24
PTPRF-202ENST00000372405 DOCK2Q92608 1830 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 MAST3O60307 1309 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 RPS8P62241 208 aaKnown RBP16.57■□□□□ 0.24
PTPRF-202ENST00000372405 DDR1Q08345 913 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 FOXD4L1Q9NU39 408 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 HMG20BQ9P0W2 317 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 SLC27A2O14975 620 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 UQCRFS1P1P0C7P4 283 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 BCAMP50895 628 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 RASGRF1Q13972 1273 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 COL9A3Q14050 684 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-202ENST00000372405 FBXO41Q8TF61 875 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 OSBP2Q969R2 916 aa16.57■□□□□ 0.24
PTPRF-202ENST00000372405 PIH1D3Q9NQM4 214 aaKnown RBP16.57■□□□□ 0.24
PTPRF-202ENST00000372405 M0R2C6 588 aa16.56■□□□□ 0.24
PTPRF-202ENST00000372405 CPA1P15085 419 aa16.56■□□□□ 0.24
PTPRF-202ENST00000372405 SLC51AQ86UW1 340 aa16.56■□□□□ 0.24
PTPRF-202ENST00000372405 TTC14Q96N46 770 aa16.56■□□□□ 0.24
PTPRF-202ENST00000372405 SERPINB2P05120 415 aa16.55■□□□□ 0.24
PTPRF-202ENST00000372405 VPS53Q5VIR6 699 aa16.55■□□□□ 0.24
PTPRF-202ENST00000372405 TFCP2L1Q9NZI6 479 aa16.55■□□□□ 0.24
PTPRF-202ENST00000372405 POLRMTO00411 1230 aaKnown RBP16.55■□□□□ 0.24
PTPRF-202ENST00000372405 NPHP1O15259 732 aa16.55■□□□□ 0.24
PTPRF-202ENST00000372405 KCNJ4P48050 445 aa16.55■□□□□ 0.24
PTPRF-202ENST00000372405 COL23A1Q86Y22 540 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-202ENST00000372405 RPAP1Q9BWH6 1393 aaPredicted RBP16.55■□□□□ 0.24
PTPRF-202ENST00000372405 ZFYP08048 801 aaPredicted RBP16.54■□□□□ 0.24
PTPRF-202ENST00000372405 UBE4AQ14139 1066 aa16.54■□□□□ 0.24
PTPRF-202ENST00000372405 SPATA5Q8NB90 893 aa16.54■□□□□ 0.24
PTPRF-202ENST00000372405 ZNF804BA4D1E1 1349 aa16.54■□□□□ 0.24
PTPRF-202ENST00000372405 CASTP20810 708 aaKnown RBP16.53■□□□□ 0.24
PTPRF-202ENST00000372405 NFKBIBQ15653 356 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 TMX3Q96JJ7 454 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 JAKMIP1Q96N16 626 aaKnown RBP16.53■□□□□ 0.24
PTPRF-202ENST00000372405 TM6SF1Q9BZW5 370 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 ZSWIM6Q9HCJ5 1215 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 CHMP5Q9NZZ3 219 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 NRXN2Q9P2S2 1712 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 ANKRD31Q8N7Z5 1873 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 FOXP2O15409 715 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 HSP90AA1P07900 732 aaKnown RBP16.53■□□□□ 0.24
PTPRF-202ENST00000372405 HMGB2P26583 209 aaKnown RBP16.53■□□□□ 0.24
PTPRF-202ENST00000372405 TSGA10IPQ3SY00 556 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 CRY2Q49AN0 593 aa16.53■□□□□ 0.24
PTPRF-202ENST00000372405 PUS7LQ9H0K6 701 aaKnown RBP16.53■□□□□ 0.24
PTPRF-202ENST00000372405 COL1A1P02452 1464 aaPredicted RBP16.52■□□□□ 0.24
PTPRF-202ENST00000372405 HSPD1P10809 573 aaKnown RBP16.52■□□□□ 0.24
PTPRF-202ENST00000372405 ZKSCAN1P17029 563 aaPredicted RBP16.52■□□□□ 0.24
PTPRF-202ENST00000372405 KLRK1P26718 216 aa16.52■□□□□ 0.24
PTPRF-202ENST00000372405 ADD2P35612 726 aa16.52■□□□□ 0.24
PTPRF-202ENST00000372405 GYG1P46976 350 aa16.52■□□□□ 0.24
PTPRF-202ENST00000372405 MCM2P49736 904 aa16.52■□□□□ 0.24
PTPRF-202ENST00000372405 TTF1Q15361 905 aaPredicted RBP16.52■□□□□ 0.24
PTPRF-202ENST00000372405 NOL8Q76FK4 1167 aaKnown RBP16.52■□□□□ 0.24
PTPRF-202ENST00000372405 APPBP2Q92624 585 aa16.52■□□□□ 0.24
PTPRF-202ENST00000372405 DSCC1Q9BVC3 393 aa16.52■□□□□ 0.24
PTPRF-202ENST00000372405 LRRFIP1Q32MZ4 808 aaKnown RBP16.51■□□□□ 0.23
PTPRF-202ENST00000372405 ZGPATQ8N5A5 531 aaKnown RBP16.51■□□□□ 0.23
PTPRF-202ENST00000372405 WWC3Q9ULE0 1092 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 U3KPZ7 1027 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-202ENST00000372405 LAMA4Q16363 1823 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 TCRBV5S4A2TA0A5A2 114 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 IDH1O75874 414 aaKnown RBP16.51■□□□□ 0.23
PTPRF-202ENST00000372405 CYP21A2P08686 494 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 AK2P54819 239 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 GRAPQ13588 217 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 WASHC4Q2M389 1173 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 SLC9C2Q5TAH2 1124 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 RNF20Q5VTR2 975 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 GRAPLQ8TC17 118 aaPredicted RBP16.51■□□□□ 0.23
PTPRF-202ENST00000372405 PNPLA7Q6ZV29 1317 aa16.51■□□□□ 0.23
PTPRF-202ENST00000372405 A0A0G2JLW4 131 aa16.5■□□□□ 0.23
PTPRF-202ENST00000372405 FRAT2O75474 233 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-202ENST00000372405 PDE6AP16499 860 aa16.5■□□□□ 0.23
PTPRF-202ENST00000372405 ST5P78524 1137 aa16.5■□□□□ 0.23
PTPRF-202ENST00000372405 CUL4AQ13619 759 aa16.5■□□□□ 0.23
PTPRF-202ENST00000372405 RUFY3Q7L099 469 aa16.5■□□□□ 0.23
PTPRF-202ENST00000372405 IL27Q8NEV9 243 aa16.5■□□□□ 0.23
PTPRF-202ENST00000372405 FAM84BQ96KN1 310 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-202ENST00000372405 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.5■□□□□ 0.232e-8■■■□□ 19.2
PTPRF-202ENST00000372405 IQSEC3Q9UPP2 1182 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-202ENST00000372405 CIZ1Q9ULV3 898 aaPredicted RBP16.49■□□□□ 0.23
PTPRF-202ENST00000372405 IRS2Q9Y4H2 1338 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms