RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 DRP2Q13474 957 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 GGT7Q9UJ14 662 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 SYNJ2O15056 1496 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 IGHMBP2P38935 993 aaKnown RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 RNF14Q9UBS8 474 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 NEBLO76041 1014 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 CLCN2P51788 898 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 A0A1B0GUA9 196 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 PPP2R5CQ13362 524 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 FAM167BQ9BTA0 163 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 DBN1Q16643 649 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 SCLT1Q96NL6 688 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 LAMB1P07942 1786 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 RIMS2Q9UQ26 1411 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 ZC3H6P61129 1189 aaKnown RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 IQCEQ6IPM2 695 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 GGT6Q6P531 493 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 GBF1Q92538 1859 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 CHD1O14646 1710 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 ANKRD1Q15327 319 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 LRRC43Q8N309 656 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 SLFN5Q08AF3 891 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 IMPACTQ9P2X3 320 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 LAMB4A4D0S4 1761 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC175P0C221 793 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 MUM1L1Q5H9M0 696 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 PSD3Q9NYI0 1048 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 RPS6KA5O75582 802 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 TMEM165Q9HC07 324 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 MYO6Q9UM54 1294 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 KNL1Q8NG31 2342 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 HNRNPH2P55795 449 aaKnown RBP4.06□□□□□ -1.76
SYNE1-201ENST00000341594 RAB15P59190 212 aa4.06□□□□□ -1.76
SYNE1-201ENST00000341594 GBP6Q6ZN66 633 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 CROCCP2Q86T23 111 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 CEP89Q96ST8 783 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 HAND2P61296 217 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 ODF2Q5BJF6 829 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 ZFYVE27Q5T4F4 411 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 IL17RAQ96F46 866 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 NT5C2P49902 561 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 SOX11P35716 441 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 GIGYF2Q6Y7W6 1299 aaKnown RBP4.05□□□□□ -1.76
SYNE1-201ENST00000341594 ARID5AQ03989 594 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 CTCFLQ8NI51 663 aaPredicted RBP4.05□□□□□ -1.76
SYNE1-201ENST00000341594 ANKRD36CQ5JPF3 1778 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 RIPOR2Q9Y4F9 1068 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 CARMIL2Q6F5E8 1435 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 SH2D4BQ5SQS7 431 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 TMEM57Q8N5G2 664 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 PPP1R14BQ96C90 147 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 PKD2L1Q9P0L9 805 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 GOLGA8CPA6NN73 597 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 AXIN1O15169 862 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 MNAT1P51948 309 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 TRIM29Q14134 588 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 NUP133Q8WUM0 1156 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC113Q9H0I3 377 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 BOLA2Q9H3K6 86 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 SPATA17Q96L03 361 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 SCAND2PQ9GZW5 306 aaPredicted RBP4.05□□□□□ -1.76
SYNE1-201ENST00000341594 AOX1Q06278 1338 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 MED14O60244 1454 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 SMTNL1A8MU46 457 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC30Q5VVM6 783 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 SPATA24Q86W54 205 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 DUOX2Q9NRD8 1548 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 RLBP1P12271 317 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 NUP155O75694 1391 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 FANCD2Q9BXW9 1451 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 RXRAP19793 462 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 CEBPAP49715 358 aaPredicted RBP4.05□□□□□ -1.76
SYNE1-201ENST00000341594 RAB3GAP1Q15042 981 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 RUFY2Q8WXA3 655 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 DDX41Q9UJV9 622 aaKnown RBP4.05□□□□□ -1.76
SYNE1-201ENST00000341594 CBFA2T2O43439 604 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 AFMP43652 599 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 BRAPQ7Z569 592 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 NCOA3Q9Y6Q9 1424 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 LRRFIP1Q32MZ4 808 aaKnown RBP4.05□□□□□ -1.76
SYNE1-201ENST00000341594 SMC3Q9UQE7 1217 aa4.05□□□□□ -1.76
SYNE1-201ENST00000341594 TTC36A6NLP5 189 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 MICALCLQ6ZW33 695 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 SND1Q7KZF4 910 aaKnown RBP eCLIP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 ATXN2Q99700 1313 aaKnown RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 NF2P35240 595 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 SH2B1Q9NRF2 756 aaPredicted RBP4.04□□□□□ -1.76
SYNE1-201ENST00000341594 MTHFSP49914 203 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 ERC1Q8IUD2 1116 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 DDX12PQ92771 950 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 GRIN2AQ12879 1464 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 MBD5Q9P267 1494 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 HIP1O00291 1037 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 TOM1L2Q6ZVM7 507 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 MAP10Q9P2G4 905 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 CFAP45Q9UL16 551 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 CCDC170Q8IYT3 715 aa4.04□□□□□ -1.76
SYNE1-201ENST00000341594 BATF3Q9NR55 127 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms