RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 ALDH1B1P30837 517 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 TNIP1Q15025 636 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 JAKMIP1Q96N16 626 aaKnown RBP10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 H0YIN7 160 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 ZNF34Q8IZ26 560 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 LIMCH1Q9UPQ0 1083 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 EAF2Q96CJ1 260 aaPredicted RBP10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 HAUS7Q99871 368 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 USP26Q9BXU7 913 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 SLIT2O94813 1529 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 PDE8BO95263 885 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 NAPBQ9H115 298 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 CNNM2Q9H8M5 875 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 CC2D2BQ6DHV5 1058 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 DPY19L2Q6NUT2 758 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 APPBP2Q92624 585 aa10.08□□□□□ -0.8
PDLIM5-201ENST00000317968 DISP2A7MBM2 1401 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 TDO2P48775 406 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 HMGN5P82970 282 aaKnown RBP10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 XAGE2Q96GT9 111 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 DBNDD2Q9BQY9 259 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 CCDC196A0A1B0GTZ2 297 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 BBOX1O75936 387 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 GRIPAP1Q4V328 841 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 JARID2Q92833 1246 aaPredicted RBP10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 CCDC171Q6TFL3 1326 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 LRRC37A3O60309 1634 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 WDR66Q8TBY9 1149 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 TBC1D22AQ8WUA7 517 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 LEMD3Q9Y2U8 911 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 ZNF213O14771 459 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 MAP4K4O95819 1239 aaPredicted RBP10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 TMTC2Q8N394 836 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 TTLL11Q8NHH1 800 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 LTBP4Q8N2S1 1624 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 TRAF1Q13077 416 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 ARHGEF6Q15052 776 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 USPL1Q5W0Q7 1092 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 PRPF40BQ6NWY9 871 aaKnown RBP10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 WASF1Q92558 559 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 ABCF2Q9UG63 623 aa10.07□□□□□ -0.8
PDLIM5-201ENST00000317968 MBD3O95983 291 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 HCLS1P14317 486 aaPredicted RBP10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 TRIM21P19474 475 aaKnown RBP10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 INTS4Q96HW7 963 aaKnown RBP10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 MAST3O60307 1309 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 B4DLN1 442 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 CSF1RP07333 972 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 MRPL12P52815 198 aaKnown RBP10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 CARMIL3Q8ND23 1372 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 ATP2B4P23634 1241 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 ANKRD20A12PQ8NF67 263 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 CRNKL1Q9BZJ0 848 aaKnown RBP10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 DRC7Q8IY82 874 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 DSCC1Q9BVC3 393 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 SPRYD3Q8NCJ5 442 aa10.06□□□□□ -0.8
PDLIM5-201ENST00000317968 NMIQ13287 307 aaPredicted RBP10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 TSR1Q2NL82 804 aaKnown RBP10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 KRT23Q9C075 422 aa10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 RPAP1Q9BWH6 1393 aaPredicted RBP10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 SF3B3Q15393 1217 aaKnown RBP10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 NEK1Q96PY6 1258 aa10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 TBC1D2Q9BYX2 928 aa10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 RBM8AQ9Y5S9 174 aaKnown RBP10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 CASTP20810 708 aaKnown RBP10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 TRIM22Q8IYM9 498 aa10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 NCOA7Q8NI08 942 aa10.05□□□□□ -0.8
PDLIM5-201ENST00000317968 CAMTA2O94983 1202 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 GSPT1P15170 499 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 UBE3CQ15386 1083 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 MCTP1Q6DN14 999 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 ZC3H12CQ9C0D7 883 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 HIBADHP31937 336 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 RRP12Q5JTH9 1297 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 CNKSR1Q969H4 720 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 UBAC1Q9BSL1 405 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 DLG5Q8TDM6 1919 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 CCDC69A6NI79 296 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 SLC9C2Q5TAH2 1124 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 OTUD7AQ8TE49 926 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 FEZ1Q99689 392 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 BSDC1Q9NW68 430 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 MTMR7Q9Y216 660 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 TIMM10P62072 90 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 TMEM87AQ8NBN3 555 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 CDK5RAP3Q96JB5 506 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 NAA16Q6N069 864 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 NOL8Q76FK4 1167 aaKnown RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 ZNF512BQ96KM6 892 aaPredicted RBP10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 GGA1Q9UJY5 639 aa10.04□□□□□ -0.8
PDLIM5-201ENST00000317968 SASH1O94885 1247 aa10.03□□□□□ -0.8
PDLIM5-201ENST00000317968 SKAP1Q86WV1 359 aa10.03□□□□□ -0.8
PDLIM5-201ENST00000317968 RTL9Q8NET4 1388 aa10.03□□□□□ -0.8
PDLIM5-201ENST00000317968 HSPA4P34932 840 aa10.03□□□□□ -0.8
PDLIM5-201ENST00000317968 IQCA1Q86XH1 822 aa10.03□□□□□ -0.8
PDLIM5-201ENST00000317968 GREM2Q9H772 168 aa10.03□□□□□ -0.8
PDLIM5-201ENST00000317968 MCM5P33992 734 aa10.03□□□□□ -0.8
PDLIM5-201ENST00000317968 SUSD4Q5VX71 490 aa10.03□□□□□ -0.8
PDLIM5-201ENST00000317968 CUL5Q93034 780 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms