RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FAM114A2Q9NRY5 505 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 ANKRD24Q8TF21 1146 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 TMEM110-MUSTN1A8MSY1 372 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 WDHD1O75717 1129 aaPredicted RBP15.67■□□□□ 0.1
CSPG4-201ENST00000308508 SNX21Q969T3 373 aa15.67■□□□□ 0.1
CSPG4-201ENST00000308508 LMOD1P29536 600 aaPredicted RBP15.66■□□□□ 0.1
CSPG4-201ENST00000308508 MPHOSPH6Q99547 160 aaKnown RBP15.66■□□□□ 0.1
CSPG4-201ENST00000308508 ALG1Q9BT22 464 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 MCM10Q7L590 875 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 MSANTD4Q8NCY6 345 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 MIS18AQ9NYP9 233 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 HECW1Q76N89 1606 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 FANCD2Q9BXW9 1451 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 F13A1P00488 732 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 EVCP57679 992 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 BAG3O95817 575 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 ZNF354CQ86Y25 554 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 GOLGA6CA6NDK9 693 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 GOLGA6DP0CG33 693 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 ARID5AQ03989 594 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 WTAPQ15007 396 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 GKAP1Q5VSY0 366 aaPredicted RBP15.66■□□□□ 0.1
CSPG4-201ENST00000308508 GOLGA6AQ9NYA3 693 aa15.66■□□□□ 0.1
CSPG4-201ENST00000308508 TTC36A6NLP5 189 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 FAM169AQ9Y6X4 670 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 KARSQ15046 597 aaKnown RBP15.65■□□□□ 0.1
CSPG4-201ENST00000308508 PLCD3Q8N3E9 789 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 CFTRP13569 1480 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 ZBTB43O43298 467 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 ASIC1P78348 528 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 CCDC62Q6P9F0 684 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 CNNM2Q9H8M5 875 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 CSRNP2Q9H175 543 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 SEL1L2Q5TEA6 688 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 CCDC38Q502W7 563 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 CCDC184Q52MB2 194 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 HPDP32754 393 aaPredicted RBP15.65■□□□□ 0.1
CSPG4-201ENST00000308508 CLUL1Q15846 466 aa15.65■□□□□ 0.1
CSPG4-201ENST00000308508 MCUR1Q96AQ8 359 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 NUCB1Q02818 461 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 BICDL1Q6ZP65 573 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 TAOK1Q7L7X3 1001 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 CROCCP2Q86T23 111 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 PPP1R9BQ96SB3 815 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 GAS8O95995 478 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 INF2Q27J81 1249 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 AMOTQ4VCS5 1084 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 HDAC9Q9UKV0 1011 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 UTP11Q9Y3A2 253 aaKnown RBP15.64■□□□□ 0.09
CSPG4-201ENST00000308508 ZPR1O75312 459 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 TTC16Q8NEE8 873 aa15.64■□□□□ 0.09
CSPG4-201ENST00000308508 BAG1Q99933 345 aaPredicted RBP15.64■□□□□ 0.09
CSPG4-201ENST00000308508 ACTN4O43707 911 aaKnown RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 TRAF1Q13077 416 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 VAT1LQ9HCJ6 419 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 KLF18A0A0U1RQI7 1052 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 DBF4Q9UBU7 674 aaPredicted RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 MAP7Q14244 749 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 TCHPQ9BT92 498 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 IFNKQ9P0W0 207 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 RTN1Q16799 776 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 SPTLC2O15270 562 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 DNM1Q05193 864 aaKnown RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 SDCCAG8Q86SQ7 713 aaPredicted RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 KCNH5Q8NCM2 988 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 GJC1P36383 396 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 CCDC122Q5T0U0 273 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 ARHGEF2Q92974 986 aaKnown RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 MAK16Q9BXY0 300 aaKnown RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 AKR1B15C9JRZ8 316 aaPredicted RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 FAM160A1Q05DH4 1040 aa15.63■□□□□ 0.09
CSPG4-201ENST00000308508 IFIT1BQ5T764 474 aaKnown RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 PHF23Q9BUL5 403 aaPredicted RBP15.63■□□□□ 0.09
CSPG4-201ENST00000308508 STMN1P16949 149 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 PROSER2Q86WR7 435 aaPredicted RBP15.62■□□□□ 0.09
CSPG4-201ENST00000308508 SH3BP5O60239 455 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 IGSF3O75054 1194 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 HAND2P61296 217 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 HMGB1P1B2RPK0 211 aaPredicted RBP15.62■□□□□ 0.09
CSPG4-201ENST00000308508 WHAMMP3Q1A5X7 153 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 IFT20Q8IY31 132 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 CCDC170Q8IYT3 715 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 RNF10Q8N5U6 811 aaKnown RBP15.62■□□□□ 0.09
CSPG4-201ENST00000308508 CCT6BQ92526 530 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 MAP2K2P36507 400 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.62■□□□□ 0.09
CSPG4-201ENST00000308508 HSPA1LP34931 641 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 HLA-DOAP06340 250 aa15.62■□□□□ 0.09
CSPG4-201ENST00000308508 LDHCP07864 332 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 TRPC3Q13507 836 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 HDAC1Q13547 482 aaPredicted RBP15.61■□□□□ 0.09
CSPG4-201ENST00000308508 TRIM14Q14142 442 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 RUFY4Q6ZNE9 571 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 EFCAB5A4FU69 1503 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 MARCKSP29966 332 aaPredicted RBP15.61■□□□□ 0.09
CSPG4-201ENST00000308508 SKAP1Q86WV1 359 aa15.61■□□□□ 0.09
CSPG4-201ENST00000308508 NAPGQ99747 312 aaPredicted RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms