RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 WDR43Q15061 677 aaKnown RBP eCLIP7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 KIAA1755Q5JYT7 1200 aa7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 ZFPM1Q8IX07 1006 aa7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 NLGN2Q8NFZ4 835 aa7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 FRAT1Q92837 279 aaPredicted RBP7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 SNRPA1P09661 255 aaKnown RBP7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 HCLS1P14317 486 aaPredicted RBP7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 ZKSCAN2Q63HK3 967 aa7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 ANKRD13DQ6ZTN6 518 aa7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 CHD1LQ86WJ1 897 aa7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 ZBED3Q96IU2 234 aaPredicted RBP7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 RIOK1Q9BRS2 568 aaKnown RBP7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 LNPKQ9C0E8 428 aa7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 FUT2Q10981 343 aa7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 PIH1D3Q9NQM4 214 aaKnown RBP7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 DBF4Q9UBU7 674 aaPredicted RBP7.27□□□□□ -1.25
TOPBP1-201ENST00000260810 PUS7LQ9H0K6 701 aaKnown RBP7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 AKAP9Q99996 3911 aa7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 CELSR2Q9HCU4 2923 aa7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 TRPM4Q8TD43 1214 aa7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 IL1RAPL2Q9NP60 686 aa7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 FAM196AQ6ZSG2 479 aa7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 UBE3BQ7Z3V4 1068 aa7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 TOM1O60784 492 aa7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 TOB2Q14106 344 aaPredicted RBP7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 HPS5Q9UPZ3 1129 aa7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 LAS1LQ9Y4W2 734 aaKnown RBP7.26□□□□□ -1.25
TOPBP1-201ENST00000260810 EN1Q05925 392 aaPredicted RBP7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 DDB1Q16531 1140 aa7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 RTL5Q5HYW3 569 aaPredicted RBP7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 TTC22Q5TAA0 569 aa7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 TFCP2Q12800 502 aa7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 SF3B3Q15393 1217 aaKnown RBP7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 NOM1Q5C9Z4 860 aaKnown RBP7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 RC3H1Q5TC82 1133 aaKnown RBP7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 ZBTB38Q8NAP3 1195 aaPredicted RBP7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 M0R2C6 588 aa7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 NFKBIEO00221 500 aa7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 EIF2S2P20042 333 aaKnown RBP7.25□□□□□ -1.25
TOPBP1-201ENST00000260810 ITGBL1O95965 494 aaPredicted RBP7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 RCSD1Q6JBY9 416 aa7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 CNTNAP1P78357 1384 aa7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 POLD1P28340 1107 aa7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 CCDC129Q6ZRS4 1044 aa7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 TRIP11Q15643 1979 aa7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 CHMLP26374 656 aa7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 HOXA10P31260 410 aaPredicted RBP7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 RHBDL3P58872 404 aa7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 LMOD2Q6P5Q4 547 aa7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 GJB4Q9NTQ9 266 aa7.24□□□□□ -1.25
TOPBP1-201ENST00000260810 CENPBP07199 599 aaPredicted RBP7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 SRGNP10124 158 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 FDPSP14324 419 aaKnown RBP7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 YBX3P16989 372 aaKnown RBP eCLIP7.23□□□□□ -1.251e-6■■□□□ 11.8
TOPBP1-201ENST00000260810 PHKA1P46020 1223 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 FAM84BQ96KN1 310 aaPredicted RBP7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 MYD88Q99836 296 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 NARFQ9UHQ1 456 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 RHPN1Q8TCX5 695 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 RPS6KA4O75676 772 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 PLEKHO1Q53GL0 409 aaPredicted RBP7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 TBC1D2Q9BYX2 928 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 ERVV-1B6SEH8 477 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 PCCAP05165 728 aaPredicted RBP7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 RASGRF1Q13972 1273 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 LMBR1LQ6UX01 489 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 MINPP1Q9UNW1 487 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 TTLL5Q6EMB2 1281 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 MED15Q96RN5 788 aa7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 DDX4Q9NQI0 724 aaKnown RBP7.23□□□□□ -1.25
TOPBP1-201ENST00000260810 TAF5LO75529 589 aa7.22□□□□□ -1.25
TOPBP1-201ENST00000260810 BMP2KLQ5H9B9 411 aa7.22□□□□□ -1.25
TOPBP1-201ENST00000260810 ERICH6BQ5W0A0 696 aa7.22□□□□□ -1.25
TOPBP1-201ENST00000260810 FGRP09769 529 aa7.22□□□□□ -1.25
TOPBP1-201ENST00000260810 GUCY1A2P33402 732 aa7.22□□□□□ -1.25
TOPBP1-201ENST00000260810 EARS2Q5JPH6 523 aaKnown RBP7.22□□□□□ -1.25
TOPBP1-201ENST00000260810 NBPF11Q86T75 865 aa7.22□□□□□ -1.25
TOPBP1-201ENST00000260810 WWC3Q9ULE0 1092 aa7.21□□□□□ -1.25
TOPBP1-201ENST00000260810 MAP4K4O95819 1239 aaPredicted RBP7.21□□□□□ -1.26
TOPBP1-201ENST00000260810 FMNL2Q96PY5 1086 aa7.21□□□□□ -1.26
TOPBP1-201ENST00000260810 GPTP24298 496 aa7.21□□□□□ -1.26
TOPBP1-201ENST00000260810 ARID4AP29374 1257 aaPredicted RBP7.21□□□□□ -1.26
TOPBP1-201ENST00000260810 AIMP1Q12904 312 aaKnown RBP7.21□□□□□ -1.26
TOPBP1-201ENST00000260810 FBXO33Q7Z6M2 555 aa7.21□□□□□ -1.26
TOPBP1-201ENST00000260810 ZGPATQ8N5A5 531 aaKnown RBP7.21□□□□□ -1.26
TOPBP1-201ENST00000260810 TATP17735 454 aaPredicted RBP7.21□□□□□ -1.26
TOPBP1-201ENST00000260810 SCAF8Q9UPN6 1271 aaKnown RBP7.21□□□□□ -1.26
TOPBP1-201ENST00000260810 AP5Z1O43299 807 aa7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 CYP21A2P08686 494 aa7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 KIF16BQ96L93 1317 aa7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 SCN4AP35499 1836 aa7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 OPLAHO14841 1288 aa7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 NTRK3Q16288 839 aa7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 HELBQ8NG08 1087 aaPredicted RBP7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 CCDC85AQ96PX6 553 aaPredicted RBP7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 EXOSC10Q01780 885 aaKnown RBP7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 HSP90AB3PQ58FF7 597 aa7.2□□□□□ -1.26
TOPBP1-201ENST00000260810 TYW1BQ6NUM6 668 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms