RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 STMN4Q9H169 189 aaPredicted RBP12.56□□□□□ -0.4
MSH6-201ENST00000234420 HMGB1P09429 215 aaKnown RBP12.56□□□□□ -0.4
MSH6-201ENST00000234420 EEF2P13639 858 aaKnown RBP12.56□□□□□ -0.4
MSH6-201ENST00000234420 TRIM68Q6AZZ1 485 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 PNMA8AQ86V59 439 aaPredicted RBP12.56□□□□□ -0.4
MSH6-201ENST00000234420 CXorf38Q8TB03 319 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 ARHGEF2Q92974 986 aaKnown RBP12.56□□□□□ -0.4
MSH6-201ENST00000234420 DACT3Q96B18 629 aaPredicted RBP12.56□□□□□ -0.4
MSH6-201ENST00000234420 BACH1O14867 736 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 SH2D4BQ5SQS7 431 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 GIMAP6Q6P9H5 292 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 IFT74Q96LB3 600 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 TFIP11Q9UBB9 837 aaKnown RBP12.56□□□□□ -0.4
MSH6-201ENST00000234420 RTEL1-TNFRSF6BF6WH68 1400 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 CTAGE9A4FU28 777 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 GOLGA6CA6NDK9 693 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 GOLGA6BA6NDN3 693 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 GOLGA6DP0CG33 693 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 NUF2Q9BZD4 464 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 TRIM7Q9C029 511 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 GOLGA6AQ9NYA3 693 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 NDUFAB1O14561 156 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 HPDP32754 393 aaPredicted RBP12.56□□□□□ -0.4
MSH6-201ENST00000234420 SF3A3Q12874 501 aaKnown RBP eCLIP12.56□□□□□ -0.4
MSH6-201ENST00000234420 MAP7Q14244 749 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 HSP90AA4PQ58FG1 418 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 ZC4H2Q9NQZ6 224 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 BCS1LQ9Y276 419 aa12.56□□□□□ -0.4
MSH6-201ENST00000234420 CNTLNQ9NXG0 1405 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 STMN1P16949 149 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 TCIRG1Q13488 830 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 RBBP5Q15291 538 aaKnown RBP12.55□□□□□ -0.4
MSH6-201ENST00000234420 LRRC45Q96CN5 670 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 CETN3O15182 167 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 POTEDQ86YR6 584 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 ZNF213O14771 459 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 PTGS1P23219 599 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 BAG3O95817 575 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 KRT13P13646 458 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 SPDYE16A6NNV3 312 aaPredicted RBP12.55□□□□□ -0.4
MSH6-201ENST00000234420 DDX39AO00148 427 aaKnown RBP12.55□□□□□ -0.4
MSH6-201ENST00000234420 STX6O43752 255 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 SPDYE2Q495Y8 402 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 SRCIN1Q9C0H9 1055 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 ACTN2P35609 894 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 TSTA3Q13630 321 aaPredicted RBP12.55□□□□□ -0.4
MSH6-201ENST00000234420 CCDC50Q8IVM0 306 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 EHBP1Q8NDI1 1231 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 SEPT10Q9P0V9 454 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 PPME1Q9Y570 386 aa12.55□□□□□ -0.4
MSH6-201ENST00000234420 CRCPO75575 148 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 ATICP31939 592 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 GSTA5Q7RTV2 222 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 SKAP1Q86WV1 359 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 TMEM57Q8N5G2 664 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 AFAP1L1Q8TED9 768 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 TMOD4Q9NZQ9 345 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 PIK3R5Q8WYR1 880 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 ZKSCAN5Q9Y2L8 839 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 KRT9P35527 623 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 HSPA2P54652 639 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 ADAMTS8Q9UP79 889 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 AKAP2Q9Y2D5 859 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 EIF6P56537 245 aaKnown RBP12.54□□□□□ -0.4
MSH6-201ENST00000234420 UBASH3AP57075 661 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 UVSSAQ2YD98 709 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 GKAP1Q5VSY0 366 aaPredicted RBP12.54□□□□□ -0.4
MSH6-201ENST00000234420 HDXQ7Z353 690 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 PRPF31Q8WWY3 499 aaKnown RBP12.54□□□□□ -0.4
MSH6-201ENST00000234420 PPP1R9BQ96SB3 815 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 CCDC77Q9BR77 488 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 BAIAP2L1Q9UHR4 511 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 NAIPQ13075 1403 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 GOLGA8AA7E2F4 631 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 GOLGA8BA8MQT2 603 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 CCDC40Q4G0X9 1142 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 CCDC194A0A1B0GVG4 234 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 TBC1D2Q9BYX2 928 aa12.54□□□□□ -0.4
MSH6-201ENST00000234420 SMIM24O75264 130 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 NAA16Q6N069 864 aaPredicted RBP12.53□□□□□ -0.4
MSH6-201ENST00000234420 CALML4Q96GE6 196 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 MRFAP1Q9Y605 127 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 MVPQ14764 893 aaKnown RBP12.53□□□□□ -0.4
MSH6-201ENST00000234420 KIF22Q14807 665 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 CCDC25Q86WR0 208 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.53□□□□□ -0.4
MSH6-201ENST00000234420 BRD2P25440 801 aaKnown RBP12.53□□□□□ -0.4
MSH6-201ENST00000234420 SELENOOQ9BVL4 669 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 PPANQ9NQ55 473 aaKnown RBP12.53□□□□□ -0.4
MSH6-201ENST00000234420 SMCR8Q8TEV9 937 aaPredicted RBP12.53□□□□□ -0.4
MSH6-201ENST00000234420 TRIM4Q9C037 500 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 SLC12A5Q9H2X9 1139 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 IVNS1ABPQ9Y6Y0 642 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 MGEA5O60502 916 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 SPATS2LQ9NUQ6 558 aaKnown RBP12.53□□□□□ -0.4
MSH6-201ENST00000234420 DDX19AQ9NUU7 478 aaKnown RBP12.53□□□□□ -0.4
MSH6-201ENST00000234420 RASAL2Q9UJF2 1139 aa12.53□□□□□ -0.4
MSH6-201ENST00000234420 AKR1B10O60218 316 aa12.52□□□□□ -0.4
MSH6-201ENST00000234420 APBA3O96018 575 aa12.52□□□□□ -0.4
MSH6-201ENST00000234420 WASF1Q92558 559 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms