RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SELENBP1Q13228 472 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 PMS2P3Q13401 168 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 DMC1Q14565 340 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 PSG3Q16557 428 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 ZSCAN26Q16670 478 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 C18orf21Q32NC0 220 aaPredicted RBP1.57□□□□□ -2.16
CD44-239ENST00000639002 TPRG1LQ5T0D9 272 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 PRMT9Q6P2P2 845 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 SASS6Q6UVJ0 657 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 TMPRSS11AQ6ZMR5 421 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 LINC00173Q6ZV60 143 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 SLC35D2Q76EJ3 337 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 NIPA1Q7RTP0 329 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 SSX6Q7RTT6 188 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CYP4Z1Q86W10 505 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CRLF3Q8IUI8 442 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CDKL3Q8IVW4 592 aaPredicted RBP1.57□□□□□ -2.16
CD44-239ENST00000639002 NELFCDQ8IXH7 590 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CCDC112Q8NEF3 446 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 OR10G4Q8NGN3 311 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 OR6K6Q8NGW6 343 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 OR6N2Q8NGY6 317 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 LYPD6BQ8NI32 183 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 PLPPR1Q8TBJ4 325 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 TCP10LQ8TDR4 215 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 TMEM239Q8WW34 195 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 CAPSLQ8WWF8 208 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 GTF2H4Q92759 462 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 TOP1MTQ969P6 601 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 ISOC2Q96AB3 205 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 APH1AQ96BI3 265 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 TM4SF18Q96CE8 201 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 ALS2CR12Q96Q35 445 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 DCUN1D5Q9BTE7 237 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 SLC25A2Q9BXI2 301 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 UCK2Q9BZX2 261 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 ACTR3CQ9C0K3 210 aaPredicted RBP1.57□□□□□ -2.16
CD44-239ENST00000639002 ARMC7Q9H6L4 198 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 LRRC19Q9H756 370 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 TMEM165Q9HC07 324 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 ANKHQ9HCJ1 492 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 SDHAF3Q9NRP4 125 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 MCUBQ9NWR8 336 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 HRASLS2Q9NWW9 162 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 TRMT112Q9UI30 125 aaKnown RBP1.57□□□□□ -2.16
CD44-239ENST00000639002 ENPP5Q9UJA9 477 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 HYOU1Q9Y4L1 999 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 LRPPRCP42704 1394 aaKnown RBP1.57□□□□□ -2.16
CD44-239ENST00000639002 PTPRTO14522 1441 aa1.57□□□□□ -2.16
CD44-239ENST00000639002 A0A0C4DFX4 3053 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 PCNTO95613 3336 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 IGKV1D-13A0A0B4J2D9 117 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 A0A1B0GTI1 187 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 HIDE1A8MVS5 230 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 F6UB75 175 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 F8VZ95 297 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 RNASEK-C17orf49H0YIS7 233 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 GOLGA6L19H0YKK7 550 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 GOLGA8RI6L899 631 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 PRMT5O14744 637 aaPredicted RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 LIN7AO14910 233 aaPredicted RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 SCAMP2O15127 329 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 SIVA1O15304 175 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 RAD51BO15315 384 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 CHST1O43916 411 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 CDC40O60508 579 aaKnown RBP eCLIP1.56□□□□□ -2.16
CD44-239ENST00000639002 EEDO75530 441 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 ATP5HO75947 161 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 CDRT1O95170 752 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 SCELO95171 688 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 RHOCP08134 193 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 PET100P0DJ07 73 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 IGKV1-13P0DP09 117 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ZNF43P17038 809 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 RAB3BP20337 219 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 WARSP23381 471 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 HTR2CP28335 458 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 UGT2B10P36537 528 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 CEACAM6P40199 344 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 CSKP41240 450 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 CDKN2BP42772 138 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 RANBP1P43487 201 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 HAAOP46952 286 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 CSNK1A1P48729 337 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 DNASE1L1P49184 302 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 NCBP2P52298 156 aaKnown RBP eCLIP1.56□□□□□ -2.16
CD44-239ENST00000639002 GPX6P59796 221 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 TSPAN5P62079 268 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 SLC7A9P82251 487 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ITGB3BPQ13352 177 aaPredicted RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 ART3Q13508 389 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 PSMD5Q16401 504 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ANKRD22Q5VYY1 191 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ZNF470Q6ECI4 717 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ADNP2Q6IQ32 1131 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 BHLHA15Q7RTS1 189 aaPredicted RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 LRRC6Q86X45 466 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 SELENOHQ8IZQ5 122 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 PDIK1LQ8N165 341 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 STPG2Q8N412 459 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 156.7 ms