RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PARP8Q8N3A8 854 aa15.9■□□□□ 0.14
CCDC28A-203ENST00000617445 FTMTQ8N4E7 242 aa15.9■□□□□ 0.14
CCDC28A-203ENST00000617445 IQCF1Q8N6M8 205 aa15.9■□□□□ 0.14
CCDC28A-203ENST00000617445 BCAS4Q8TDM0 211 aa15.9■□□□□ 0.14
CCDC28A-203ENST00000617445 OTULINQ96BN8 352 aa15.9■□□□□ 0.14
CCDC28A-203ENST00000617445 SGK3Q96BR1 496 aa15.9■□□□□ 0.14
CCDC28A-203ENST00000617445 C5orf63A6NC05 138 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 CLDN34H7C241 214 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 GYG2O15488 501 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 PRODHO43272 600 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 E2F6O75461 281 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 TIPRLO75663 272 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 POU1F1P28069 291 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 OPRL1P41146 370 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 FAM3AP98173 230 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 GINS1Q14691 196 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 LYPD2Q6UXB3 125 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 SPATC1Q76KD6 591 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 PRSS45Q7RTY3 260 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 CSNK2A3Q8NEV1 391 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 OR8S1Q8NH09 359 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 REEP6Q96HR9 211 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 OR10A2Q9H208 303 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 OR51V1Q9H2C8 321 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 MED20Q9H944 212 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 RNPEPL1Q9HAU8 725 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 C1orf123Q9NWV4 160 aa15.89■□□□□ 0.13
CCDC28A-203ENST00000617445 OOEPA6NGQ2 149 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 A6NLC8 198 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 PLATP00750 562 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 GRPP07492 148 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 H2BFMP0C1H6 154 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 ANOS1P23352 680 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 CDK5Q00535 292 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 FOXL1Q12952 345 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 BAMBIQ13145 260 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 FLOT2Q14254 428 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 OR8B8Q15620 311 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 SLC35D3Q5M8T2 416 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 TMEM179BQ7Z7N9 219 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 OTOSQ8NHW6 89 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 DNAJC9Q8WXX5 260 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 ITFG2Q969R8 447 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 MMADHCQ9H3L0 296 aaPredicted RBP15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 NIPAL2Q9H841 368 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 DNAJB9Q9UBS3 223 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 ZNF391Q9UJN7 358 aa15.88■□□□□ 0.13
CCDC28A-203ENST00000617445 hCG_38984A0A1B0GV85 526 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 TNFRSF13BO14836 293 aaPredicted RBP15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 LHBP01229 141 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 LYNP07948 512 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 HKR1P10072 659 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 ZNF121P58317 390 aaPredicted RBP15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 SFRP4Q6FHJ7 346 aaPredicted RBP15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 PLBD1Q6P4A8 553 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 FAM57BQ71RH2 274 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 SPATA24Q86W54 205 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 BCL6BQ8N143 479 aaPredicted RBP15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 BOLLQ8N9W6 283 aaKnown RBP15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 PAPD5Q8NDF8 572 aaKnown RBP15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 C19orf18Q8NEA5 215 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 SLC25A28Q96A46 364 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 NRBF2Q96F24 287 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 ABCB9Q9NP78 766 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 KIF17Q9P2E2 1029 aa15.87■□□□□ 0.13
CCDC28A-203ENST00000617445 hCG_1807616A0A1W2PRN6 198 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 DNAJC9-AS1A6NH13 148 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 C3orf80F5H4A9 247 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 ADAM20O43506 726 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 ECDO95905 644 aaPredicted RBP15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 IGHV4-38-2P0DP08 117 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 CFHR2P36980 270 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 GNALP38405 381 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 GSK3AP49840 483 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 CBX1P83916 185 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 AWAT1Q58HT5 328 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 TEX36Q5VZQ5 186 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 GCSAMQ8N6F7 178 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 PNLDC1Q8NA58 520 aaKnown RBP15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 SGMS2Q8NHU3 365 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 THEM6Q8WUY1 208 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 PGAM5Q96HS1 289 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 TECTBQ96PL2 329 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 KAAG1Q9UBP8 84 aa15.86■□□□□ 0.13
CCDC28A-203ENST00000617445 TCRBV3S1A0A5B6 114 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 FKBP6O75344 327 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 RNASE1P07998 156 aaKnown RBP15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 MUC1P15941 1255 aaPredicted RBP15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 NAA10P41227 235 aaPredicted RBP15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 FGF12P61328 243 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 IL5RAQ01344 420 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 MICBQ29980 383 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 GPR157Q5UAW9 335 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 CPOQ8IVL8 374 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 GALNT4Q8N4A0 578 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 ZNF48Q96MX3 618 aaPredicted RBP15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 AMELYQ99218 206 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 MICU1Q9BPX6 476 aa15.85■□□□□ 0.13
CCDC28A-203ENST00000617445 SLC25A19Q9HC21 320 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms