RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-215	ENST00000597649	SLC7A6	Q92536	515 aa		13.72	□□□□□ -0.21
SHKBP1-215	ENST00000597649	PTP4A1	Q93096	173 aa		13.72	□□□□□ -0.21
SHKBP1-215	ENST00000597649	MARCH7	Q9H992	704 aa		13.72	□□□□□ -0.21
SHKBP1-215	ENST00000597649	NDRG4	Q9ULP0	352 aa	Known RBP	13.72	□□□□□ -0.21
SHKBP1-215	ENST00000597649	POLR1D	Q9Y2S0	133 aa		13.72	□□□□□ -0.21
SHKBP1-215	ENST00000597649	DOCK11	Q5JSL3	2073 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	DNAH3	Q8TD57	4116 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	IGLV1-36	A0A0B4J1U3	117 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	SRRM5	B3KS81	715 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649		H0YJX3	145 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649		M0R129	80 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	DLGAP1	O14490	977 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	CYB5R3	P00387	301 aa	Predicted RBP	13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	ZNF823	P16415	610 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	FMO3	P31513	532 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	VHL	P40337	213 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	FAM201A	Q5SY85	155 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	ASPHD2	Q6ICH7	369 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	ARL9	Q6T311	187 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649		Q6YL49	198 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	SYT9	Q86SS6	491 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	OR5AS1	Q8N127	324 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	MUC20	Q8N307	709 aa	Predicted RBP	13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	OR4F5	Q8NH21	305 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	ZDHHC16	Q969W1	377 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	PITX2	Q99697	317 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	TMEM246	Q9BRR3	403 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	ADI1	Q9BV57	179 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	CDADC1	Q9BWV3	514 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	CHIA	Q9BZP6	476 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	NMNAT2	Q9BZQ4	307 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	RASSF4	Q9H2L5	321 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	EMC7	Q9NPA0	242 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	POLE4	Q9NR33	117 aa		13.71	□□□□□ -0.21
SHKBP1-215	ENST00000597649	KMT2C	Q8NEZ4	4911 aa	Known RBP	13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	IGHV3-64D	A0A0J9YX35	117 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	CLPSL1	A2RUU4	121 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	C12orf71	A8MTZ7	269 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649		H0YAE9	185 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	PRODH	O43272	600 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	MPZL2	O60487	215 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	GLCE	O94923	617 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	NDUFA7	O95182	113 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	COX5B	P10606	129 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	CLU	P10909	449 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	RPS2	P15880	293 aa	Known RBP	13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	CAPG	P40121	348 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	PMEL	P40967	661 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	AQP4	P55087	323 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	GNB2	P62879	340 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	IL5RA	Q01344	420 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	DBP	Q10586	325 aa	Predicted RBP	13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	APOF	Q13790	326 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	SLC35D3	Q5M8T2	416 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	LCN1P1	Q5VSP4	162 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	OTP	Q5XKR4	325 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	BRICD5	Q6PL45	260 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	IZUMO2	Q6UXV1	221 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	SETD9	Q8NE22	299 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	MEGF10	Q96KG7	1140 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	NUDT16L1	Q9BRJ7	211 aa	Known RBP	13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	HCAR1	Q9BXC0	346 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	MMP27	Q9H306	513 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	MIOX	Q9UGB7	285 aa		13.7	□□□□□ -0.22
SHKBP1-215	ENST00000597649	TVP23A	A6NH52	213 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649		H0YL77	283 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	SELE	P16581	610 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	TUBG1	P23258	451 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	CPT2	P23786	658 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	GSTT1	P30711	240 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	HTR5A	P47898	357 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	HSPA13	P48723	471 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	FGF12	P61328	243 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	IL18R1	Q13478	541 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	HLX	Q14774	488 aa	Predicted RBP	13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	NXNL2	Q5VZ03	156 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	RUSC1-AS1	Q66K80	236 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	LYPD2	Q6UXB3	125 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	VASH1	Q7L8A9	365 aa	Predicted RBP	13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	C1QL4	Q86Z23	238 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	GID4	Q8IVV7	300 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	BBS1	Q8NFJ9	593 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	OR10AD1	Q8NGE0	317 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	RFK	Q969G6	155 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	TUBG2	Q9NRH3	451 aa		13.69	□□□□□ -0.22
SHKBP1-215	ENST00000597649	SNTN	A6NMZ2	147 aa		13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649		E9PQ18	207 aa		13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	DOK2	O60496	412 aa		13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	SNRPG	P62308	76 aa	Known RBP	13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	LSM6	P62312	80 aa	Known RBP	13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	ADARB1	P78563	741 aa	Known RBP	13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	EFNB1	P98172	346 aa		13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	KCNMB1	Q16558	191 aa		13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	MEP1B	Q16820	701 aa		13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	MEDAG	Q5VYS4	303 aa		13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	OR2T2	Q6IF00	324 aa		13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	ZNF841	Q6ZN19	808 aa		13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	MEPCE	Q7L2J0	689 aa	Known RBP	13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	BCDIN3D	Q7Z5W3	292 aa	Known RBP	13.68	□□□□□ -0.22
SHKBP1-215	ENST00000597649	ZNF511	Q8NB15	262 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms