RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 SUMO3P55854 103 aaPredicted RBP16.9■□□□□ 0.3
RTN4-201ENST00000317610 BIDP55957 195 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 SKA3Q8IX90 412 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 LMX1AQ8TE12 382 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 RHBDD1Q8TEB9 315 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 TMEM41AQ96HV5 264 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 OR10C1Q96KK4 312 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 VN1R1Q9GZP7 353 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 ZNF304Q9HCX3 659 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 FBXO9Q9UK97 447 aaPredicted RBP16.9■□□□□ 0.3
RTN4-201ENST00000317610 PET100P0DJ07 73 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 RPS2P15880 293 aaKnown RBP16.9■□□□□ 0.3
RTN4-201ENST00000317610 OR3A4PP47883 348 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 HSD11B2P80365 405 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 FAM189A2Q15884 450 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 AVPI1Q5T686 147 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 OR5H2Q8NGV7 314 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 OR13G1Q8NGZ3 307 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 SPACA5Q96QH8 159 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 TMEM59Q9BXS4 323 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 ALKBH4Q9NXW9 302 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 B3GALT5Q9Y2C3 310 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 LHFPL6Q9Y693 200 aa16.9■□□□□ 0.3
RTN4-201ENST00000317610 MEX3AA1L020 520 aaKnown RBP16.89■□□□□ 0.29
RTN4-201ENST00000317610 LIPT2A6NK58 231 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 TAAR5O14804 337 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 EIF5AP63241 154 aaKnown RBP16.89■□□□□ 0.29
RTN4-201ENST00000317610 RAB32Q13637 225 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 AADACL3Q5VUY0 350 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 OR56B1Q8NGI3 324 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 OR1L3Q8NH93 324 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 SSC4DQ8WTU2 575 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 DDIT4LQ96D03 193 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 MRPL38Q96DV4 380 aaKnown RBP16.89■□□□□ 0.29
RTN4-201ENST00000317610 C5orf34Q96MH7 638 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 IFT22Q9H7X7 185 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.89■□□□□ 0.292e-7■■■□□ 17.5
RTN4-201ENST00000317610 SERINC1Q9NRX5 453 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 PRR13Q9NZ81 148 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 B3GAT1Q9P2W7 334 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 FAM96BQ9Y3D0 163 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 SEC16AO15027 2179 aa16.89■□□□□ 0.29
RTN4-201ENST00000317610 ZNF878C9JN71 531 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 ZNF354AO60765 605 aaPredicted RBP16.88■□□□□ 0.29
RTN4-201ENST00000317610 CRYBA1P05813 215 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 CCL1P22362 96 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 S100A12P80511 92 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 C17orf67Q0P5P2 114 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 THEM4Q5T1C6 240 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 OR51F2Q8NH61 342 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 RXFP4Q8TDU9 374 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 MICU1Q9BPX6 476 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 EMC6Q9BV81 110 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 SUSD2Q9UGT4 822 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 ETV2O00321 342 aaPredicted RBP16.88■□□□□ 0.29
RTN4-201ENST00000317610 SPP1P10451 314 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 PDZK1IP1Q13113 114 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 PRSS58Q8IYP2 241 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 ARHGAP5-AS1Q96IT6 56 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 HRH4Q9H3N8 390 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 BANF2Q9H503 90 aa16.88■□□□□ 0.29
RTN4-201ENST00000317610 CD5P06127 495 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 FOSL2P15408 326 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 ZNF17P17021 662 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 PI3P19957 117 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 RNF4P78317 190 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 DLX2Q07687 328 aaPredicted RBP16.87■□□□□ 0.29
RTN4-201ENST00000317610 EIF5AL1Q6IS14 154 aaKnown RBP16.87■□□□□ 0.29
RTN4-201ENST00000317610 FAM89BQ8N5H3 189 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 OR8B12Q8NGG6 310 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 SOX7Q9BT81 388 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 RPH3AQ9Y2J0 694 aaPredicted RBP16.87■□□□□ 0.29
RTN4-201ENST00000317610 FIGNL2A6NMB9 653 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 RNASEK-C17orf49H0YIS7 233 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 IFNA4P05014 189 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 AMY2BP19961 511 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 LPAR6P43657 344 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 P2RY4P51582 365 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 FOXF1Q12946 379 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 LANCL3Q6ZV70 420 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 URM1Q9BTM9 101 aaKnown RBP16.87■□□□□ 0.29
RTN4-201ENST00000317610 DUSP15Q9H1R2 295 aaPredicted RBP16.87■□□□□ 0.29
RTN4-201ENST00000317610 RNF122Q9H9V4 155 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 OR2S2Q9NQN1 319 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 ATPIF1Q9UII2 106 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 LHX6Q9UPM6 363 aa16.87■□□□□ 0.29
RTN4-201ENST00000317610 USP34Q70CQ2 3546 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 A0A1W2PP11 408 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 C2orf72A6NCS6 295 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 SHISA7A6NL88 538 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 FOXI3A8MTJ6 420 aaPredicted RBP16.86■□□□□ 0.29
RTN4-201ENST00000317610 FCGR3AP08637 254 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 FOLR2P14207 255 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 NFYBP25208 207 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 PAX6P26367 422 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 SULT1A2P50226 295 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 BTNL8Q6UX41 500 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 ABHD12BQ7Z5M8 362 aaPredicted RBP16.86■□□□□ 0.29
RTN4-201ENST00000317610 TMEM200AQ86VY9 491 aa16.86■□□□□ 0.29
RTN4-201ENST00000317610 PLPP5Q8NEB5 264 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms