RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NKX6-2Q9C056 277 aaPredicted RBP7.72□□□□□ -1.17
USP40-203ENST00000427112 HIF3AQ9Y2N7 669 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 KCNK7Q9Y2U2 307 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ZNF318Q5VUA4 2279 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 LINC01387J3KSC0 135 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ABCD4O14678 606 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 XRCC2O43543 280 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ASAH2BP0C7U1 165 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 RAB3AP20336 220 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ADH6P28332 368 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 HSD11B1P28845 292 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 RORAP35398 523 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 NPBWR1P48145 328 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 RRADP55042 308 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 RPL27P61353 136 aaKnown RBP7.72□□□□□ -1.17
USP40-203ENST00000427112 AIMP2Q13155 320 aaKnown RBP7.72□□□□□ -1.17
USP40-203ENST00000427112 EEF1A1P5Q5VTE0 462 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 GLIPR1L1Q6UWM5 242 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ZNF600Q6ZNG1 722 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 MAMDC2Q7Z304 686 aaPredicted RBP7.72□□□□□ -1.17
USP40-203ENST00000427112 RRNAD1Q96FB5 475 aaKnown RBP7.72□□□□□ -1.17
USP40-203ENST00000427112 LCORQ96JN0 433 aaPredicted RBP7.72□□□□□ -1.17
USP40-203ENST00000427112 OR5B2Q96R09 309 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 RSRP1Q9BUV0 290 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 TLNRD1Q9H1K6 362 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 OR5AC2Q9NZP5 309 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 LAMA5O15230 3695 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 NAP1L6A6NFF2 107 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 SLC17A2O00624 439 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ZNF749O43361 778 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ACTL6AO96019 429 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 CELA2AP08217 269 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 PCP4P48539 62 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 TAS2R19P59542 299 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ZNF141Q15928 474 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 H3F3CQ6NXT2 135 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 LINC00114Q6XXX2 140 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ZNF283Q8N7M2 679 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 SUMF1Q8NBK3 374 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 OR6N1Q8NGY5 312 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 SUCNR1Q9BXA5 334 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 PLEKHA1Q9HB21 404 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 HHLA2Q9UM44 414 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ZNF175Q9Y473 711 aa7.72□□□□□ -1.17
USP40-203ENST00000427112 ZNF705GA8MUZ8 300 aaPredicted RBP7.71□□□□□ -1.17
USP40-203ENST00000427112 TNFSF14O43557 240 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 SCGNO76038 276 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 ZNF20P17024 532 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 CTRB1P17538 263 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 GALP22466 123 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 RBMXP38159 391 aaKnown RBP7.71□□□□□ -1.17
USP40-203ENST00000427112 FHITP49789 147 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 CLDN6P56747 220 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 GLO1Q04760 184 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 ZNF684Q5T5D7 378 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 CTRB2Q6GPI1 263 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 APCDD1LQ8NCL9 501 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 OR4K15Q8NH41 348 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 SHARPINQ9H0F6 387 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 UFSP2Q9NUQ7 469 aa7.71□□□□□ -1.17
USP40-203ENST00000427112 CFAP47Q6ZTR5 3102 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 ATMQ13315 3056 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 SPTY2D1-AS1A0A0U1RR47 76 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 ZNF217O75362 1048 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 DIRAS3O95661 229 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 DBHP09172 617 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 RAB6AP20340 208 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 SNTB1Q13884 538 aaKnown RBP7.71□□□□□ -1.18
USP40-203ENST00000427112 KLHL24Q6TFL4 600 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 DRAM2Q6UX65 266 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 C1QL2Q7Z5L3 287 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 CPEB2Q7Z5Q1 589 aaKnown RBP7.71□□□□□ -1.18
USP40-203ENST00000427112 OR1L3Q8NH93 324 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 AKR7LQ8NHP1 331 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 LHFPL5Q8TAF8 219 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 TTC9Q92623 222 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 LMF2Q9BU23 707 aaKnown RBP7.71□□□□□ -1.18
USP40-203ENST00000427112 COPS7AQ9UBW8 275 aa7.71□□□□□ -1.18
USP40-203ENST00000427112 PTPRZ1P23471 2315 aaPredicted RBP7.71□□□□□ -1.18
USP40-203ENST00000427112 CXorf51AA0A1B0GTR3 108 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 NPIPB9F8W1W9 429 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 DNASE2O00115 360 aaPredicted RBP7.7□□□□□ -1.18
USP40-203ENST00000427112 OR2A4O95047 310 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 RNF224P0DH78 156 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 PNMTP11086 282 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 OMGP23515 440 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 CSF2RBP32927 897 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 CD80P33681 288 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 CASRP41180 1078 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 OR3A2P47893 321 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 PPT1P50897 306 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 ZNF616Q08AN1 781 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 RASGEF1BQ0VAM2 473 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 KCTD18Q6PI47 426 aaPredicted RBP7.7□□□□□ -1.18
USP40-203ENST00000427112 SPICQ8N5J4 248 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 OR2AE1Q8NHA4 323 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 CD300LFQ8TDQ1 290 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 C11orf40Q8WZ69 217 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 ARHGAP5-AS1Q96IT6 56 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 OR2A7Q96R45 310 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms