RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZBP1Q9H171 429 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 RARRES3Q9UL19 164 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 HSF4Q9ULV5 492 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 DHDHQ9UQ10 334 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 LTBP2Q14767 1821 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SH2D7A6NKC9 451 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 H3BMH7 237 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SOX1O00570 391 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 OR2T1O43869 369 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 CLPSP04118 112 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 HNRNPA1P09651 372 aaKnown RBP eCLIP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 CDK2P24941 298 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 KCNJ3P48549 501 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ELAVL3Q14576 367 aaKnown RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 B3GLCTQ6Y288 498 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 C17orf82Q86X59 251 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 NRROSQ86YC3 692 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 NKAIN3Q8N8D7 197 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 C19orf47Q8N9M1 422 aaKnown RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF511Q8NB15 262 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 OR4K15Q8NH41 348 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 TCTN2Q96GX1 697 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 PHF7Q9BWX1 381 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 SLC46A2Q9BY10 475 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 CDH20Q9HBT6 801 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 NOX4Q9NPH5 578 aa4.79□□□□□ -1.64
SYNE1-220ENST00000471834 PCYT1BQ9Y5K3 369 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-220ENST00000471834 OTOL1A6NHN0 477 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 SLC33A1O00400 549 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TERTO14746 1132 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ONECUT2O95948 504 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 MT-ND4P03905 459 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 VAMP1P23763 118 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 GNRHRP30968 328 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 BCL6P41182 706 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 RAB5CP51148 216 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 HSF1Q00613 529 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 CHRFAM7AQ494W8 412 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 FIP1L1Q6UN15 594 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 OR52E2Q8NGJ4 325 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF519Q8TB69 540 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 RNF133Q8WVZ7 376 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 FRRS1LQ9P0K9 344 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PTRH2Q9Y3E5 179 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 K7N7A8 449 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 NRG2O14511 850 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 CST4P01036 141 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 SLC35E2P0CK97 266 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF17P17021 662 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PEBP1P30086 187 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 MRPL49Q13405 166 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 DUSP5Q16690 384 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PYY3Q5JQD4 70 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ESPNLQ6ZVH7 1005 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 Q7L0L9 218 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 OR4N5Q8IXE1 308 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 OTOSQ8NHW6 89 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 RRNAD1Q96FB5 475 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 C4orf36Q96KX1 117 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 CDX2Q99626 313 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 SDHAF3Q9NRP4 125 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 LRFN1Q9P244 771 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 CACNA1GO43497 2377 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TLCD2A6NGC4 264 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PRRG2O14669 202 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 GSTP1P09211 210 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PTGER1P34995 402 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 RAB4BP61018 213 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ZP4Q12836 540 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PIP5KL1Q5T9C9 394 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 STEAP1BQ6NZ63 245 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 LEG1Q6P5S2 330 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 DHRS11Q6UWP2 260 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF429Q86V71 674 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PRR22Q8IZ63 422 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TEX29Q8N6K0 151 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 DDIT4LQ96D03 193 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF559Q9BR84 538 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 SORBS1Q9BX66 1292 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PRTFDC1Q9NRG1 225 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 WDR45Q9Y484 360 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM269A0A1B0GVZ9 245 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 OR52A4PA6NMU1 304 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 SRPX2O60687 465 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 RBBP9O75884 186 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 NXPH3O95157 252 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 APOC3P02656 99 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 CPMP14384 443 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 EPHA1P21709 976 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PSMB6P28072 239 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ABCD3P28288 659 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TAS2R31P59538 309 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ALKBH1Q13686 389 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 RHEBQ15382 184 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 HES5Q5TA89 166 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 HEPN1Q6WQI6 88 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TTLL10Q6ZVT0 673 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 OR5AS1Q8N127 324 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 BEST4Q8NFU0 473 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 CPT1CQ8TCG5 803 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms