RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 TMEM200CA6NKL6 621 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 GPR31O00270 319 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 CD74P04233 296 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 ANOS1P23352 680 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 CRABP1P29762 137 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 AVPR2P30518 371 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 CAPZA1P52907 286 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 DCAF7P61962 342 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 HSD11B2P80365 405 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 PAQR4Q8N4S7 273 aaPredicted RBP18.38■□□□□ 0.53
CLK3-202ENST00000395066 OIT3Q8WWZ8 545 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 ASB10Q8WXI3 467 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 ADAT3Q96EY9 351 aaPredicted RBP18.38■□□□□ 0.53
CLK3-202ENST00000395066 CST11Q9H112 138 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 SUSD2Q9UGT4 822 aa18.38■□□□□ 0.53
CLK3-202ENST00000395066 GNB3P16520 340 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 BDKRB2P30411 391 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 PPP1R1AQ13522 171 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.37■□□□□ 0.53
CLK3-202ENST00000395066 CASTOR1Q8WTX7 329 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 SOX7Q9BT81 388 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.37■□□□□ 0.53
CLK3-202ENST00000395066 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.37■□□□□ 0.53
CLK3-202ENST00000395066 RAB27BO00194 218 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 TO15178 435 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 H2BFMP0C1H6 154 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 CASRP41180 1078 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 STK11Q15831 433 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 C14orf28Q4W4Y0 310 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 ZNF441Q8N8Z8 693 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 ZNF248Q8NDW4 579 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 ASF1BQ9NVP2 202 aa18.37■□□□□ 0.53
CLK3-202ENST00000395066 TMEM218A2RU14 115 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 RAB19A4D1S5 217 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 F5H0A9 414 aaPredicted RBP18.36■□□□□ 0.53
CLK3-202ENST00000395066 PUSL1Q8N0Z8 303 aaKnown RBP18.36■□□□□ 0.53
CLK3-202ENST00000395066 MLXQ9UH92 298 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 SULT2B1O00204 365 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 IGHMP01871 453 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 DCNP07585 359 aaKnown RBP18.36■□□□□ 0.53
CLK3-202ENST00000395066 SLC2A1P11166 492 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 CSNK1EP49674 416 aaKnown RBP18.36■□□□□ 0.53
CLK3-202ENST00000395066 TMEM88Q6PEY1 159 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 SVBPQ8N300 66 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 ADAD2Q8NCV1 583 aaKnown RBP18.36■□□□□ 0.53
CLK3-202ENST00000395066 OR13C9Q8NGT0 318 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 OR2I1PQ8NGU4 316 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 C5orf34Q96MH7 638 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 UCK1Q9HA47 277 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 ZNF107Q9UII5 783 aaPredicted RBP18.36■□□□□ 0.53
CLK3-202ENST00000395066 ARPC4-TTLL3A0A0A6YYG9 625 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 ZNF98A6NK75 572 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 HRH1P35367 487 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 AKR1C2P52895 323 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 TLE3Q04726 772 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 AKR1C1Q04828 323 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 RNASE10Q5GAN6 216 aaKnown RBP18.36■□□□□ 0.53
CLK3-202ENST00000395066 LYG2Q86SG7 212 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 C17orf82Q86X59 251 aaPredicted RBP18.36■□□□□ 0.53
CLK3-202ENST00000395066 LYPD6Q86Y78 171 aa18.36■□□□□ 0.53
CLK3-202ENST00000395066 IGHV1OR21-1A0A087WYE8 117 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 TTRP02766 147 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 VAMP1P23763 118 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 ZBTB25P24278 435 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 RNF4P78317 190 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 HFEQ30201 348 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 ZNF260Q3ZCT1 412 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 PTCRAQ6ISU1 281 aaPredicted RBP18.35■□□□□ 0.53
CLK3-202ENST00000395066 HAGHLQ6PII5 290 aaPredicted RBP18.35■□□□□ 0.53
CLK3-202ENST00000395066 KCTD9Q7L273 389 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 SLC25A42Q86VD7 318 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 LDLRAD3Q86YD5 345 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 THAP6Q8TBB0 222 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 KCNK17Q96T54 332 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 NICN1Q9BSH3 213 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 ASCC3Q8N3C0 2202 aaKnown RBP18.35■□□□□ 0.53
CLK3-202ENST00000395066 OR2AT4A6NND4 320 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 AKR1C4P17516 323 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 HLA-GP17693 338 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 PRKXP51817 358 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 AKR1D1P51857 326 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 FOXK1P85037 733 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 INPP5JQ15735 1006 aaPredicted RBP18.35■□□□□ 0.53
CLK3-202ENST00000395066 C1orf100Q5SVJ3 147 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 ZNF813Q6ZN06 617 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 INO80EQ8NBZ0 244 aaPredicted RBP18.35■□□□□ 0.53
CLK3-202ENST00000395066 C11orf40Q8WZ69 217 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 AQP3Q92482 292 aa18.35■□□□□ 0.53
CLK3-202ENST00000395066 OR2T1O43869 369 aa18.34■□□□□ 0.53
CLK3-202ENST00000395066 CD27P26842 260 aa18.34■□□□□ 0.53
CLK3-202ENST00000395066 RPL35P42766 123 aaKnown RBP18.34■□□□□ 0.53
CLK3-202ENST00000395066 HOXA1P49639 335 aaPredicted RBP18.34■□□□□ 0.53
CLK3-202ENST00000395066 BIDP55957 195 aa18.34■□□□□ 0.53
CLK3-202ENST00000395066 HSF1Q00613 529 aa18.34■□□□□ 0.53
CLK3-202ENST00000395066 FOXF1Q12946 379 aa18.34■□□□□ 0.53
CLK3-202ENST00000395066 GUCA2BQ16661 112 aa18.34■□□□□ 0.53
CLK3-202ENST00000395066 UNQ6126/PRO20091Q6UXV3 157 aa18.34■□□□□ 0.53
CLK3-202ENST00000395066 FAM219AQ8IW50 185 aa18.34■□□□□ 0.53
CLK3-202ENST00000395066 ZC3H10Q96K80 434 aaKnown RBP18.34■□□□□ 0.53
CLK3-202ENST00000395066 LMO7DNF2Z398 122 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms