RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 C1QTNF5Q9BXJ0 243 aa16.09■□□□□ 0.17
CCDC28A-203ENST00000617445 MAGIXQ9H6Y5 334 aa16.09■□□□□ 0.17
CCDC28A-203ENST00000617445 IL20Q9NYY1 176 aa16.09■□□□□ 0.17
CCDC28A-203ENST00000617445 POLR3KQ9Y2Y1 108 aaPredicted RBP16.09■□□□□ 0.17
CCDC28A-203ENST00000617445 LYVE1Q9Y5Y7 322 aa16.09■□□□□ 0.17
CCDC28A-203ENST00000617445 CDH10Q9Y6N8 788 aa16.09■□□□□ 0.17
CCDC28A-203ENST00000617445 DOCK11Q5JSL3 2073 aa16.09■□□□□ 0.17
CCDC28A-203ENST00000617445 LOC105371242A0A075B767 164 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 IQCF6A8MYZ5 107 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 B2RBV5 119 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 EPHA1P21709 976 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 GGT2P36268 569 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 MDH2P40926 338 aaKnown RBP16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 MAGEA2P43356 314 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 BTG1P62324 171 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 HLXQ14774 488 aaPredicted RBP16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 RSPO1Q2MKA7 263 aaPredicted RBP16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 OR2T2Q6IF00 324 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 MUC20Q8N307 709 aaPredicted RBP16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 SDR9C7Q8NEX9 313 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 OR2T4Q8NH00 348 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 NSL1Q96IY1 281 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 JMJD8Q96S16 334 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 ATF6BQ99941 703 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 C7orf69Q9H7B7 122 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 PATZ1Q9HBE1 687 aaKnown RBP16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 GCM1Q9NP62 436 aa16.08■□□□□ 0.16
CCDC28A-203ENST00000617445 TMEM178BH3BS89 294 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 AVPP01185 164 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 ACSM4P0C7M7 580 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 ZNF823P16415 610 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 ERFP50548 548 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 TPTEP56180 551 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 LCN2P80188 198 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 MALLQ13021 153 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 SLC35F1Q5T1Q4 408 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 CYP2R1Q6VVX0 501 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 RASSF6Q6ZTQ3 369 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 OR5AS1Q8N127 324 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 SIGLEC11Q96RL6 698 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 DDOQ99489 341 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 SLC30A2Q9BRI3 323 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 TMEM100Q9NV29 134 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 BAIAP2Q9UQB8 552 aa16.07■□□□□ 0.16
CCDC28A-203ENST00000617445 A0A1B0GWJ7 208 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 BHLHE40O14503 412 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 CCNB2O95067 398 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 VENTXO95231 258 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 FSTL3O95633 263 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 TRAP1Q12931 704 aaKnown RBP16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 TRIM25Q14258 630 aaKnown RBP16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 GK3PQ14409 553 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 ZNF181Q2M3W8 571 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 ZNF770Q6IQ21 691 aaPredicted RBP16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 LCN8Q6JVE9 175 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 CFAP77Q6ZQR2 320 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 DHFR2Q86XF0 187 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 LINC00346Q8IVM7 164 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 FITM2Q8N6M3 262 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 CELF2-AS1Q8N7Q2 184 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 SEMA6DQ8NFY4 1073 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 OR4C15Q8NGM1 316 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 SPTSSAQ969W0 71 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 MEGF10Q96KG7 1140 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 CCT8L2Q96SF2 557 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 BTBD10Q9BSF8 475 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 SUCNR1Q9BXA5 334 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 EGLN3Q9H6Z9 239 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 DCAF16Q9NXF7 216 aa16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 NOP16Q9Y3C1 178 aaKnown RBP16.06■□□□□ 0.16
CCDC28A-203ENST00000617445 LRRC30A6NM36 301 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 F5H5K5 113 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 GASTP01350 101 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 ATP6V1B2P21281 511 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 FPR2P25090 351 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 SLC6A9P48067 706 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 MMP16P51512 607 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 HILS1P60008 231 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 ZMYND11Q15326 602 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 FAM98BQ52LJ0 330 aaKnown RBP16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 CLEC12AQ5QGZ9 265 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 C1orf87Q8N0U7 546 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 LNX2Q8N448 690 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 PROKR2Q8NFJ6 384 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 OR9Q2Q8NGE9 314 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 ERGIC1Q969X5 290 aa16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 PNRC2Q9NPJ4 139 aaKnown RBP16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 MRPL22Q9NWU5 206 aaKnown RBP16.05■□□□□ 0.16
CCDC28A-203ENST00000617445 TCRBV5S2A0A599 114 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 A8MXK9 166 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 F5H0A9 414 aaPredicted RBP16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 TRIM77I1YAP6 450 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 LCATP04180 440 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 CALB2P22676 271 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 ZFP36P26651 326 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 GK2Q14410 553 aaPredicted RBP16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 MICAQ29983 383 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 ESCO2Q56NI9 601 aa16.04■□□□□ 0.16
CCDC28A-203ENST00000617445 DGCR6LQ9BY27 220 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms