RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 KLBQ86Z14 1044 aa17.65■□□□□ 0.42
COL9A3-207ENST00000467819 FAM86B1Q8N7N1 296 aa17.65■□□□□ 0.42
COL9A3-207ENST00000467819 OR52E2Q8NGJ4 325 aa17.65■□□□□ 0.42
COL9A3-207ENST00000467819 ERMAPQ96PL5 475 aaPredicted RBP17.65■□□□□ 0.42
COL9A3-207ENST00000467819 ZNF747Q9BV97 191 aa17.65■□□□□ 0.42
COL9A3-207ENST00000467819 TMEM165Q9HC07 324 aa17.65■□□□□ 0.42
COL9A3-207ENST00000467819 NDUFAB1O14561 156 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 TMPRSS2O15393 492 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 IGHV4-38-2P0DP08 117 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 PSME3P61289 254 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 GNB2P62879 340 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 HIST1H3AP68431 136 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 PAX8Q06710 450 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 FAM201AQ5SY85 155 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 HIST2H3PS2Q5TEC6 136 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 LEG1Q6P5S2 330 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 PGM2L1Q6PCE3 622 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 SMARCD3Q6STE5 483 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 BTNL3Q6UXE8 466 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 HIST2H3AQ71DI3 136 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 JAZF1Q86VZ6 243 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 PARP8Q8N3A8 854 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 FANK1Q8TC84 345 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 C7orf34Q96L11 122 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 SLC30A2Q9BRI3 323 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 TMEM246Q9BRR3 403 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 ZMAT3Q9HA38 289 aaKnown RBP17.64■□□□□ 0.41
COL9A3-207ENST00000467819 SRA1Q9HD15 236 aaKnown RBP17.64■□□□□ 0.41
COL9A3-207ENST00000467819 ABCD2Q9UBJ2 740 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 V9GYQ6 96 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 TRRAPQ9Y4A5 3859 aa17.64■□□□□ 0.41
COL9A3-207ENST00000467819 IGLV1-36A0A0B4J1U3 117 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 IQCF6A8MYZ5 107 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 SELEP16581 610 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 PAX2Q02962 417 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 KRT72Q14CN4 511 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 GLYATQ6IB77 296 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 SHISA2Q6UWI4 295 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 LINC00346Q8IVM7 164 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 NEIL1Q96FI4 390 aaPredicted RBP17.63■□□□□ 0.41
COL9A3-207ENST00000467819 HCAR1Q9BXC0 346 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 MIOXQ9UGB7 285 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 B9D1Q9UPM9 204 aa17.63■□□□□ 0.41
COL9A3-207ENST00000467819 SAMD4AQ9UPU9 718 aaKnown RBP17.63■□□□□ 0.41
COL9A3-207ENST00000467819 SOX21Q9Y651 276 aaPredicted RBP17.63■□□□□ 0.41
COL9A3-207ENST00000467819 IGHV2-70DA0A0C4DH43 119 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 LRRC30A6NM36 301 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 HLA-DPB1P04440 258 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 FPR3P25089 353 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 COX10Q12887 443 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 RSPO1Q2MKA7 263 aaPredicted RBP17.62■□□□□ 0.41
COL9A3-207ENST00000467819 LRRN1Q6UXK5 716 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 CFAP77Q6ZQR2 320 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 C1orf87Q8N0U7 546 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 OR6V1Q8N148 313 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 OR8B3Q8NGG8 313 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 SLC25A28Q96A46 364 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 PLEKHA8Q96JA3 519 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 DHRS1Q96LJ7 313 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 OR8B2Q96RD0 313 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 NMNAT3Q96T66 252 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 FUZQ9BT04 418 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 DCAF13Q9NV06 445 aaKnown RBP17.62■□□□□ 0.41
COL9A3-207ENST00000467819 TMEM100Q9NV29 134 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 ZNF446Q9NWS9 450 aa17.62■□□□□ 0.41
COL9A3-207ENST00000467819 TRAV40A0A0B4J280 105 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 F5H5K5 113 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 RENP00797 406 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 RNASE1P07998 156 aaKnown RBP17.61■□□□□ 0.41
COL9A3-207ENST00000467819 SLC6A6P31641 620 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 PMELP40967 661 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 SPIBQ01892 262 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 ZNF404Q494X3 552 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 RNF148Q8N7C7 305 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 SLC26A10Q8NG04 563 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 OR4K13Q8NH42 304 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 RAB40AQ8WXH6 277 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 TAF15Q92804 592 aaKnown RBP eCLIP17.61■□□□□ 0.41
COL9A3-207ENST00000467819 PITX2Q99697 317 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 OR52D1Q9H346 318 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 FN3KQ9H479 309 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 UNKLQ9H9P5 680 aaKnown RBP17.61■□□□□ 0.41
COL9A3-207ENST00000467819 RPRD1BQ9NQG5 326 aaKnown RBP17.61■□□□□ 0.41
COL9A3-207ENST00000467819 ADA2Q9NZK5 511 aa17.61■□□□□ 0.41
COL9A3-207ENST00000467819 ACSM4P0C7M7 580 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 IRF2P14316 349 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 HIST1H1CP16403 213 aaKnown RBP17.6■□□□□ 0.41
COL9A3-207ENST00000467819 CPT2P23786 658 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 MDH1P40925 334 aaKnown RBP17.6■□□□□ 0.41
COL9A3-207ENST00000467819 MTNR1AP48039 350 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 PITPNBP48739 271 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 SLC9A3R2Q15599 337 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 ZNF181Q2M3W8 571 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 RFX4Q33E94 735 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 SLC18B1Q6NT16 456 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 COLCA1Q6ZS62 124 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 NLRC3Q7RTR2 1065 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 C19orf18Q8NEA5 215 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 UPRTQ96BW1 309 aa17.6■□□□□ 0.41
COL9A3-207ENST00000467819 IFT27Q9BW83 186 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms