RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 C12orf49Q9H741 205 aa18.27■□□□□ 0.52
PNKP-203ENST00000593946 UPB1Q9UBR1 384 aa18.27■□□□□ 0.52
PNKP-203ENST00000593946 MALT1Q9UDY8 824 aa18.27■□□□□ 0.52
PNKP-203ENST00000593946 GSTK1Q9Y2Q3 226 aa18.27■□□□□ 0.52
PNKP-203ENST00000593946 RTTNQ86VV8 2226 aa18.27■□□□□ 0.51
PNKP-203ENST00000593946 SPTA1P02549 2419 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 WDR1O75083 606 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 PNPP00491 289 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 KIR3DL2P43630 455 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 CCR9P51686 369 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 MFGE8Q08431 387 aaPredicted RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 WDR38Q5JTN6 314 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 OR2A2Q6IF42 318 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 TEX19Q8NA77 164 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 SH3GL3Q99963 347 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 KCNN2Q9H2S1 579 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 ZNF281Q9Y2X9 895 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 R4GMQ9 66 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 RP1L1Q8IWN7 2480 aaPredicted RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 ITPR1Q14643 2758 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 MBD3L4A6NDZ8 208 aaPredicted RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 MBD3L3A6NE82 208 aaPredicted RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 MBD3L5A6NJ08 208 aaPredicted RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 DVL2O14641 736 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 TPOP07202 933 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 PTGER4P35408 488 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 CD163Q86VB7 1156 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 CATSPERDQ86XM0 798 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 OR13C5Q8NGS8 318 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 OR5AK2Q8NH90 309 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 MBD3L2Q8NHZ7 208 aaPredicted RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 FAM57AQ8TBR7 257 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 RGP1Q92546 391 aaPredicted RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 SNRNP40Q96DI7 357 aaKnown RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 CXorf56Q9H5V9 222 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 DDX28Q9NUL7 540 aaKnown RBP18.26■□□□□ 0.51
PNKP-203ENST00000593946 PRSS50Q9UI38 385 aa18.26■□□□□ 0.51
PNKP-203ENST00000593946 FIGNL2A6NMB9 653 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 TMEM212A6NML5 194 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 SERPINA3P01011 423 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 FOXG1P55316 489 aaPredicted RBP18.25■□□□□ 0.51
PNKP-203ENST00000593946 FAPQ12884 760 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 YIF1BQ5BJH7 314 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 FBXW9Q5XUX1 488 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 RTL6Q6ICC9 239 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 KLHL24Q6TFL4 600 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 ZNF813Q6ZN06 617 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 ABHD12BQ7Z5M8 362 aaPredicted RBP18.25■□□□□ 0.51
PNKP-203ENST00000593946 UBE2J2Q8N2K1 259 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 IL17RDQ8NFM7 739 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 NIPAL2Q9H841 368 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 GALNT8Q9NY28 637 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 EMC9Q9Y3B6 208 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 FAM215AQ9Y5M1 114 aa18.25■□□□□ 0.51
PNKP-203ENST00000593946 MMP16P51512 607 aa18.24■□□□□ 0.51
PNKP-203ENST00000593946 ARF1P84077 181 aaKnown RBP18.24■□□□□ 0.51
PNKP-203ENST00000593946 LSAMPQ13449 338 aa18.24■□□□□ 0.51
PNKP-203ENST00000593946 ZNF829Q3KNS6 432 aaPredicted RBP18.24■□□□□ 0.51
PNKP-203ENST00000593946 ACSM3Q53FZ2 586 aa18.24■□□□□ 0.51
PNKP-203ENST00000593946 CCDC92Q53HC0 331 aaPredicted RBP18.24■□□□□ 0.51
PNKP-203ENST00000593946 TFAP2EQ6VUC0 442 aa18.24■□□□□ 0.51
PNKP-203ENST00000593946 SEM1Q6ZVN7 128 aa18.24■□□□□ 0.51
PNKP-203ENST00000593946 SYT9Q86SS6 491 aa18.24■□□□□ 0.51
PNKP-203ENST00000593946 PKD1L2Q7Z442 2459 aa18.24■□□□□ 0.51
PNKP-203ENST00000593946 LOC110117498-PIK3R3F6TDL0 507 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 KIR2DL2P43627 348 aaPredicted RBP18.23■□□□□ 0.51
PNKP-203ENST00000593946 DGUOKQ16854 277 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 PRR30Q53SZ7 412 aaPredicted RBP18.23■□□□□ 0.51
PNKP-203ENST00000593946 ZNF544Q6NX49 715 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 SKA3Q8IX90 412 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 DACH2Q96NX9 599 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 MED18Q9BUE0 208 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 SLIRPQ9GZT3 109 aaKnown RBP18.23■□□□□ 0.51
PNKP-203ENST00000593946 COMMD4Q9H0A8 199 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 SLC25A18Q9H1K4 315 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 G6PC2Q9NQR9 355 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 FAM206AQ9NX38 181 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 CCDC59Q9P031 241 aaKnown RBP18.23■□□□□ 0.51
PNKP-203ENST00000593946 SLC22A13Q9Y226 551 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 SLC5A6Q9Y289 635 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 PMF1-BGLAPU3KQ54 211 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 ATRXP46100 2492 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 TMEM269A0A1B0GVZ9 245 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 FARS2O95363 451 aaKnown RBP18.23■□□□□ 0.51
PNKP-203ENST00000593946 IL1AP01583 271 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 ABOP16442 354 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 RPS19P39019 145 aaKnown RBP18.23■□□□□ 0.51
PNKP-203ENST00000593946 PSMA6P60900 246 aaKnown RBP18.23■□□□□ 0.51
PNKP-203ENST00000593946 GRB2P62993 217 aaKnown RBP18.23■□□□□ 0.51
PNKP-203ENST00000593946 ZMAT1Q5H9K5 638 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 ELFN2Q5R3F8 820 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 C1orf185Q5T7R7 199 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 C9orf135Q5VTT2 229 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 UNQ9370/PRO34162Q6UXP9 181 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 CEACAM19Q7Z692 300 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 ZNF676Q8N7Q3 588 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 OR6K3Q8NGY3 331 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 ATF6BQ99941 703 aa18.23■□□□□ 0.51
PNKP-203ENST00000593946 WACQ9BTA9 647 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms