RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 B4GALT1P15291 398 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 ZMAT1Q5H9K5 638 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 TMEM200AQ86VY9 491 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 NINQ8N4C6 2090 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 NECAP2Q9NVZ3 263 aa14.23□□□□□ -0.13
PTPRF-201ENST00000359947 FAM221AA4D161 298 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 CTDSP2O14595 271 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 GLCEO94923 617 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 CD300AQ9UGN4 299 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 EXO1Q9UQ84 846 aaKnown RBP14.22□□□□□ -0.13
PTPRF-201ENST00000359947 A0A1B0GUL6 1792 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 NFYAP23511 347 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-201ENST00000359947 CXorf67Q86X51 503 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-201ENST00000359947 MORN4Q8NDC4 146 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF583Q96ND8 569 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 SH2D1BO14796 132 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 EDIL3O43854 480 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 PTTG1O95997 202 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 HTR1FP30939 366 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 PIGAP37287 484 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF766Q5HY98 468 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 SPNS2Q8IVW8 549 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 NRG4Q8WWG1 115 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 FBXL2Q9UKC9 423 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 GPR55Q9Y2T6 319 aaPredicted RBP14.22□□□□□ -0.13
PTPRF-201ENST00000359947 RNF4P78317 190 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 MC2RQ01718 297 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 BTLAQ7Z6A9 289 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 DPPA2Q7Z7J5 298 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 TMPRSS11DO60235 418 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 FAM213BQ8TBF2 198 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 FAM3DQ96BQ1 224 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 REEP6Q96HR9 211 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 SLC23A1Q9UHI7 598 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 C1orf196B1AJZ1 125 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 ZNF195O14628 629 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 CXCL10P02778 98 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 BMP5P22003 454 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 RAC1P63000 192 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 ADGRF3Q8IZF5 1079 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 KIRREL1Q96J84 757 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 UBQLN3Q9H347 655 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 MED17Q9NVC6 651 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 TAS2R4Q9NYW5 299 aa14.22□□□□□ -0.13
PTPRF-201ENST00000359947 MT-CO3P00414 261 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 CEACAM5P06731 702 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 SRMP19623 302 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 SRP14P37108 136 aaKnown RBP14.21□□□□□ -0.13
PTPRF-201ENST00000359947 ACSM1Q08AH1 577 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.21□□□□□ -0.13
PTPRF-201ENST00000359947 PLA1AQ53H76 456 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 CGB2Q6NT52 195 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 NCBP2LA6PVI3 153 aaKnown RBP14.21□□□□□ -0.13
PTPRF-201ENST00000359947 E9PI62 339 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 CRYZL1O95825 349 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 PARP16Q8N5Y8 322 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 UHRF2Q96PU4 802 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 GPRIN2O60269 458 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 ACTBL2Q562R1 376 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 LRRC56Q8IYG6 542 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-201ENST00000359947 RPL3LQ92901 407 aaKnown RBP14.21□□□□□ -0.13
PTPRF-201ENST00000359947 SLC39A9Q9NUM3 307 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 ALPLP05186 524 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 RPS27P42677 84 aaKnown RBP14.21□□□□□ -0.13
PTPRF-201ENST00000359947 RPS16P62249 146 aaKnown RBP14.21□□□□□ -0.13
PTPRF-201ENST00000359947 HBG1P69891 147 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 HBG2P69892 147 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 SFXN4Q6P4A7 337 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 LAX1Q8IWV1 398 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 SMAP2Q8WU79 429 aaPredicted RBP14.21□□□□□ -0.13
PTPRF-201ENST00000359947 TMEM30AQ9NV96 361 aa14.21□□□□□ -0.13
PTPRF-201ENST00000359947 PRAF2O60831 178 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 CSF3P09919 207 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 AADACP22760 399 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 SPCS2Q15005 226 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 FBXL6Q8N531 539 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 SLAMF6Q96DU3 332 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF816-ZNF321PA0A0X1KG74 233 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 HMGN4O00479 90 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 SLC2A10O95528 541 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 EMDP50402 254 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 NDUFA6P56556 154 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 ZNF321PQ8N8H1 164 aa14.21□□□□□ -0.14
PTPRF-201ENST00000359947 LMO7DNF2Z398 122 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 IHHQ14623 411 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 MPPED2Q15777 294 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 ACKR1Q16570 336 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 HIST1H1CP16403 213 aaKnown RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 THBS3P49746 956 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 RBP2P50120 134 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 SELENBP1Q13228 472 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 CATSPERDQ86XM0 798 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 CNTNAP3Q9BZ76 1288 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 COPS3Q9UNS2 423 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 C19orf53Q9UNZ5 99 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 CRYABP02511 175 aaKnown RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 GPR12P47775 334 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 SOWAHCQ53LP3 525 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-201ENST00000359947 PRAMEF5Q5TYX0 476 aa14.2□□□□□ -0.14
PTPRF-201ENST00000359947 PRAMEF6Q5VXH4 476 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms