RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 SPATA32Q96LK8 384 aa17.64■□□□□ 0.42
CLN3-253ENST00000636977 ALDH8A1Q9H2A2 487 aaPredicted RBP17.64■□□□□ 0.42
CLN3-253ENST00000636977 COL18A1P39060 1754 aa17.64■□□□□ 0.41
CLN3-253ENST00000636977 PDCP20941 246 aa17.64■□□□□ 0.41
CLN3-253ENST00000636977 PGBD1Q96JS3 809 aa17.64■□□□□ 0.41
CLN3-253ENST00000636977 ARFGEF2Q9Y6D5 1785 aa17.64■□□□□ 0.41
CLN3-253ENST00000636977 LRRC24Q50LG9 513 aa17.64■□□□□ 0.41
CLN3-253ENST00000636977 LUZP1Q86V48 1076 aa17.64■□□□□ 0.41
CLN3-253ENST00000636977 NUP62CLQ9H1M0 184 aa17.64■□□□□ 0.41
CLN3-253ENST00000636977 MRVI1Q9Y6F6 885 aa17.64■□□□□ 0.41
CLN3-253ENST00000636977 MST1RQ04912 1400 aa17.64■□□□□ 0.41
CLN3-253ENST00000636977 TMEM94Q12767 1356 aa17.63■□□□□ 0.41
CLN3-253ENST00000636977 TERF1P54274 439 aa17.63■□□□□ 0.41
CLN3-253ENST00000636977 CEBPZQ03701 1054 aaKnown RBP17.63■□□□□ 0.41
CLN3-253ENST00000636977 SCRN1Q12765 414 aa17.63■□□□□ 0.41
CLN3-253ENST00000636977 ZBTB3Q9H5J0 574 aa17.63■□□□□ 0.41
CLN3-253ENST00000636977 ADAMTSL3P82987 1691 aa17.63■□□□□ 0.41
CLN3-253ENST00000636977 NR1I2O75469 434 aa17.62■□□□□ 0.41
CLN3-253ENST00000636977 CCDC192P0DO97 292 aa17.62■□□□□ 0.41
CLN3-253ENST00000636977 NOLC1Q14978 699 aaKnown RBP eCLIP17.62■□□□□ 0.41
CLN3-253ENST00000636977 FTOQ9C0B1 505 aaKnown RBP eCLIP17.62■□□□□ 0.41
CLN3-253ENST00000636977 KCNF1Q9H3M0 494 aa17.62■□□□□ 0.41
CLN3-253ENST00000636977 KIF1AQ12756 1690 aa17.62■□□□□ 0.41
CLN3-253ENST00000636977 TYRO3Q06418 890 aa17.62■□□□□ 0.41
CLN3-253ENST00000636977 MAP3K11Q16584 847 aa17.62■□□□□ 0.41
CLN3-253ENST00000636977 DNTTIP2Q5QJE6 756 aaKnown RBP17.62■□□□□ 0.41
CLN3-253ENST00000636977 CHST3Q7LGC8 479 aa17.62■□□□□ 0.41
CLN3-253ENST00000636977 KBTBD3Q8NAB2 608 aa17.62■□□□□ 0.41
CLN3-253ENST00000636977 TSC1Q92574 1164 aa17.62■□□□□ 0.41
CLN3-253ENST00000636977 PUS3Q9BZE2 481 aaKnown RBP17.62■□□□□ 0.41
CLN3-253ENST00000636977 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.61■□□□□ 0.41
CLN3-253ENST00000636977 H7C1W4 665 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 PIBF1Q8WXW3 757 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 U3KPZ7 1027 aaPredicted RBP17.61■□□□□ 0.41
CLN3-253ENST00000636977 ELP1O95163 1332 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 GLI3P10071 1580 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 RESTQ13127 1097 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 APOBRQ0VD83 1088 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 KRT32Q14532 448 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 SASS6Q6UVJ0 657 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 TNMDQ9H2S6 317 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 PYCARDQ9ULZ3 195 aa17.61■□□□□ 0.41
CLN3-253ENST00000636977 GOLGA6L4A6NEF3 574 aa17.6■□□□□ 0.41
CLN3-253ENST00000636977 CCT2P78371 535 aaKnown RBP17.6■□□□□ 0.41
CLN3-253ENST00000636977 NCOA5Q9HCD5 579 aaKnown RBP17.6■□□□□ 0.41
CLN3-253ENST00000636977 PAG1Q9NWQ8 432 aa17.6■□□□□ 0.41
CLN3-253ENST00000636977 CTDNEP1O95476 244 aa17.59■□□□□ 0.41
CLN3-253ENST00000636977 ANO6Q4KMQ2 910 aa17.59■□□□□ 0.41
CLN3-253ENST00000636977 CCDC85AQ96PX6 553 aaPredicted RBP17.59■□□□□ 0.41
CLN3-253ENST00000636977 SCAND2PQ9GZW5 306 aaPredicted RBP17.59■□□□□ 0.41
CLN3-253ENST00000636977 TTLL5Q6EMB2 1281 aa17.59■□□□□ 0.41
CLN3-253ENST00000636977 NAP1L2Q9ULW6 460 aaPredicted RBP17.59■□□□□ 0.41
CLN3-253ENST00000636977 H3BQV1 296 aa17.58■□□□□ 0.4
CLN3-253ENST00000636977 IFFO2Q5TF58 517 aa17.58■□□□□ 0.4
CLN3-253ENST00000636977 FAM200AQ8TCP9 573 aa17.58■□□□□ 0.4
CLN3-253ENST00000636977 BICD2Q8TD16 824 aa17.58■□□□□ 0.4
CLN3-253ENST00000636977 CBX8Q9HC52 389 aa17.58■□□□□ 0.4
CLN3-253ENST00000636977 CWC25Q9NXE8 425 aaPredicted RBP17.58■□□□□ 0.4
CLN3-253ENST00000636977 FAM177BA6PVY3 158 aa17.58■□□□□ 0.4
CLN3-253ENST00000636977 GPHNQ9NQX3 736 aaPredicted RBP17.58■□□□□ 0.4
CLN3-253ENST00000636977 GUCY1B3Q02153 619 aa17.57■□□□□ 0.4
CLN3-253ENST00000636977 NSUN7Q8NE18 718 aaKnown RBP17.57■□□□□ 0.4
CLN3-253ENST00000636977 ZNF330Q9Y3S2 320 aaPredicted RBP17.57■□□□□ 0.4
CLN3-253ENST00000636977 SH3TC1Q8TE82 1336 aa17.57■□□□□ 0.4
CLN3-253ENST00000636977 A0A087WWV3 80 aa17.57■□□□□ 0.4
CLN3-253ENST00000636977 HSPD1P10809 573 aaKnown RBP17.56■□□□□ 0.4
CLN3-253ENST00000636977 GTF2E1P29083 439 aaPredicted RBP17.56■□□□□ 0.4
CLN3-253ENST00000636977 CLSTN2Q9H4D0 955 aa17.56■□□□□ 0.4
CLN3-253ENST00000636977 A0A1B0GUL7 405 aa17.56■□□□□ 0.4
CLN3-253ENST00000636977 M0R2C6 588 aa17.56■□□□□ 0.4
CLN3-253ENST00000636977 ADD1P35611 737 aaKnown RBP17.56■□□□□ 0.4
CLN3-253ENST00000636977 HSP90AB3PQ58FF7 597 aa17.56■□□□□ 0.4
CLN3-253ENST00000636977 DHX32Q7L7V1 743 aaKnown RBP17.56■□□□□ 0.4
CLN3-253ENST00000636977 LAMA4Q16363 1823 aa17.56■□□□□ 0.4
CLN3-253ENST00000636977 MAST3O60307 1309 aa17.56■□□□□ 0.4
CLN3-253ENST00000636977 TNS3Q68CZ2 1445 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 PTGS1P23219 599 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 ZMYM1Q5SVZ6 1142 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 SMARCC2Q8TAQ2 1214 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 DNAJC25Q9H1X3 360 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 NRBP1Q9UHY1 535 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 SPATA31A3Q5VYP0 1347 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 PTPDC1A2A3K4 754 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 E7EWF7 191 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 PFKFB2O60825 505 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 STRCP1A6NGW2 1772 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 PKD1L3Q7Z443 1732 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 IFIT1P09914 478 aaKnown RBP17.55■□□□□ 0.4
CLN3-253ENST00000636977 ADORA1P30542 326 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 EXOSC10Q01780 885 aaKnown RBP17.55■□□□□ 0.4
CLN3-253ENST00000636977 TOM1L2Q6ZVM7 507 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 RFX7Q2KHR2 1363 aa17.55■□□□□ 0.4
CLN3-253ENST00000636977 EYA2O00167 538 aa17.54■□□□□ 0.4
CLN3-253ENST00000636977 FKBP4Q02790 459 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLN3-253ENST00000636977 ZCRB1Q8TBF4 217 aaKnown RBP17.54■□□□□ 0.4
CLN3-253ENST00000636977 OSBP2Q969R2 916 aa17.54■□□□□ 0.4
CLN3-253ENST00000636977 PALLDQ8WX93 1383 aa17.54■□□□□ 0.4
CLN3-253ENST00000636977 KIAA1524Q8TCG1 905 aa17.54■□□□□ 0.4
CLN3-253ENST00000636977 SPTLC3Q9NUV7 552 aa17.54■□□□□ 0.4
CLN3-253ENST00000636977 IL15P40933 162 aaPredicted RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms