RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 INTS5Q6P9B9 1019 aaKnown RBP8.42□□□□□ -1.06
TCF4-249ENST00000625716 SYMPKQ92797 1274 aaKnown RBP8.42□□□□□ -1.06
TCF4-249ENST00000625716 ZNF496Q96IT1 587 aaPredicted RBP8.42□□□□□ -1.06
TCF4-249ENST00000625716 AAASQ9NRG9 546 aa8.42□□□□□ -1.06
TCF4-249ENST00000625716 ZNF831Q5JPB2 1677 aa8.42□□□□□ -1.06
TCF4-249ENST00000625716 CEMIPQ8WUJ3 1361 aa8.41□□□□□ -1.06
TCF4-249ENST00000625716 A0A087WZG4 1122 aa8.41□□□□□ -1.06
TCF4-249ENST00000625716 GYS1P13807 737 aa8.41□□□□□ -1.06
TCF4-249ENST00000625716 CLCN1P35523 988 aa8.41□□□□□ -1.06
TCF4-249ENST00000625716 DCTN1Q14203 1278 aa8.41□□□□□ -1.06
TCF4-249ENST00000625716 TAF7Q15545 349 aaPredicted RBP8.41□□□□□ -1.06
TCF4-249ENST00000625716 NLGN2Q8NFZ4 835 aa8.41□□□□□ -1.06
TCF4-249ENST00000625716 PNISRQ8TF01 805 aaKnown RBP8.41□□□□□ -1.06
TCF4-249ENST00000625716 ZNF775Q96BV0 537 aaPredicted RBP8.41□□□□□ -1.06
TCF4-249ENST00000625716 PLEKHF1Q96S99 279 aa8.41□□□□□ -1.06
TCF4-249ENST00000625716 PRKRIP1Q9H875 184 aaPredicted RBP8.41□□□□□ -1.06
TCF4-249ENST00000625716 ZNF330Q9Y3S2 320 aaPredicted RBP8.41□□□□□ -1.06
TCF4-249ENST00000625716 UBR3Q6ZT12 1888 aa8.4□□□□□ -1.06
TCF4-249ENST00000625716 SRCAPQ6ZRS2 3230 aa8.4□□□□□ -1.06
TCF4-249ENST00000625716 HEG1Q9ULI3 1381 aa8.4□□□□□ -1.06
TCF4-249ENST00000625716 GRIN3BO60391 1043 aa8.4□□□□□ -1.06
TCF4-249ENST00000625716 ZMYND10O75800 440 aa8.4□□□□□ -1.06
TCF4-249ENST00000625716 LMOD3Q0VAK6 560 aa8.4□□□□□ -1.06
TCF4-249ENST00000625716 SRP68Q9UHB9 627 aaKnown RBP8.4□□□□□ -1.06
TCF4-249ENST00000625716 DACH1Q9UI36 760 aa8.4□□□□□ -1.06
TCF4-249ENST00000625716 ZBTB1Q9Y2K1 713 aa8.4□□□□□ -1.06
TCF4-249ENST00000625716 ADAMTS7Q9UKP4 1686 aa8.4□□□□□ -1.07
TCF4-249ENST00000625716 KCPQ6ZWJ8 1503 aa8.39□□□□□ -1.07
TCF4-249ENST00000625716 SOS1Q07889 1333 aaPredicted RBP8.39□□□□□ -1.07
TCF4-249ENST00000625716 USP42Q9H9J4 1324 aaKnown RBP8.39□□□□□ -1.07
TCF4-249ENST00000625716 KCNQ3O43525 872 aa8.39□□□□□ -1.07
TCF4-249ENST00000625716 SNRPA1P09661 255 aaKnown RBP8.39□□□□□ -1.07
TCF4-249ENST00000625716 RIPK4P57078 832 aa8.39□□□□□ -1.07
TCF4-249ENST00000625716 USPL1Q5W0Q7 1092 aa8.39□□□□□ -1.07
TCF4-249ENST00000625716 NARFQ9UHQ1 456 aa8.39□□□□□ -1.07
TCF4-249ENST00000625716 PCDHGC3Q9UN70 934 aa8.39□□□□□ -1.07
TCF4-249ENST00000625716 COL15A1P39059 1388 aa8.38□□□□□ -1.07
TCF4-249ENST00000625716 COL5A3P25940 1745 aaPredicted RBP8.38□□□□□ -1.07
TCF4-249ENST00000625716 COL24A1Q17RW2 1714 aa8.38□□□□□ -1.07
TCF4-249ENST00000625716 AVPP01185 164 aa8.38□□□□□ -1.07
TCF4-249ENST00000625716 IL6STP40189 918 aaPredicted RBP8.38□□□□□ -1.07
TCF4-249ENST00000625716 TGFB2P61812 414 aa8.38□□□□□ -1.07
TCF4-249ENST00000625716 TRIM32Q13049 653 aa8.38□□□□□ -1.07
TCF4-249ENST00000625716 NEUROD2Q15784 382 aa8.38□□□□□ -1.07
TCF4-249ENST00000625716 CCDC146Q8IYE0 955 aa8.38□□□□□ -1.07
TCF4-249ENST00000625716 ZC3H15Q8WU90 426 aaKnown RBP8.38□□□□□ -1.07
TCF4-249ENST00000625716 RUNDC1Q96C34 613 aa8.38□□□□□ -1.07
TCF4-249ENST00000625716 MIS18AQ9NYP9 233 aa8.38□□□□□ -1.07
TCF4-249ENST00000625716 TJP1Q07157 1748 aa8.37□□□□□ -1.07
TCF4-249ENST00000625716 ZBTB24O43167 697 aaPredicted RBP8.37□□□□□ -1.07
TCF4-249ENST00000625716 A1BGP04217 495 aa8.37□□□□□ -1.07
TCF4-249ENST00000625716 SSTR3P32745 418 aaPredicted RBP8.37□□□□□ -1.07
TCF4-249ENST00000625716 TMPOP42166 694 aaKnown RBP8.37□□□□□ -1.07
TCF4-249ENST00000625716 EIF5P55010 431 aaKnown RBP8.37□□□□□ -1.07
TCF4-249ENST00000625716 USP16Q9Y5T5 823 aa8.37□□□□□ -1.07
TCF4-249ENST00000625716 CICQ96RK0 1608 aaPredicted RBP8.36□□□□□ -1.07
TCF4-249ENST00000625716 WNT7AO00755 349 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 NPHP1O15259 732 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 ANP32CO43423 234 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 BICDL1Q6ZP65 573 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 CYP4X1Q8N118 509 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 CRIPAKQ8N1N5 446 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 THUMPD2Q9BTF0 503 aaKnown RBP8.36□□□□□ -1.07
TCF4-249ENST00000625716 TSPYL4Q9UJ04 414 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 WWC3Q9ULE0 1092 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 ADAMTS8Q9UP79 889 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 TBC1D2BQ9UPU7 963 aa8.36□□□□□ -1.07
TCF4-249ENST00000625716 RRP7AQ9Y3A4 280 aaKnown RBP8.36□□□□□ -1.07
TCF4-249ENST00000625716 VIRMAQ69YN4 1812 aaKnown RBP8.36□□□□□ -1.07
TCF4-249ENST00000625716 A0A0G2JLW4 131 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 PRAMEF22A3QJZ6 481 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 YBX3P16989 372 aaKnown RBP eCLIP8.35□□□□□ -1.07
TCF4-249ENST00000625716 TM4SF1P30408 202 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 SKOR1P84550 965 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 NFIXQ14938 502 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 DZIP3Q86Y13 1208 aaKnown RBP8.35□□□□□ -1.07
TCF4-249ENST00000625716 NUTM1Q86Y26 1132 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 KRI1Q8N9T8 703 aaKnown RBP8.35□□□□□ -1.07
TCF4-249ENST00000625716 SPIRE2Q8WWL2 714 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 MRGPRX2Q96LB1 330 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 BABAM1Q9NWV8 329 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 BCS1LQ9Y276 419 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 ZNF652Q9Y2D9 606 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 LAS1LQ9Y4W2 734 aaKnown RBP8.35□□□□□ -1.07
TCF4-249ENST00000625716 UBR2Q8IWV8 1755 aa8.35□□□□□ -1.07
TCF4-249ENST00000625716 MYH14Q7Z406 1995 aaKnown RBP8.34□□□□□ -1.07
TCF4-249ENST00000625716 POLRMTO00411 1230 aaKnown RBP8.34□□□□□ -1.07
TCF4-249ENST00000625716 SERPINB2P05120 415 aa8.34□□□□□ -1.07
TCF4-249ENST00000625716 DPEP1P16444 411 aa8.34□□□□□ -1.07
TCF4-249ENST00000625716 SMPD1P17405 629 aa8.34□□□□□ -1.07
TCF4-249ENST00000625716 JUNDP17535 347 aa8.34□□□□□ -1.07
TCF4-249ENST00000625716 PIP4K2AP48426 406 aaPredicted RBP8.34□□□□□ -1.07
TCF4-249ENST00000625716 EIF4A1P60842 406 aaKnown RBP8.34□□□□□ -1.07
TCF4-249ENST00000625716 DDR1Q08345 913 aa8.34□□□□□ -1.07
TCF4-249ENST00000625716 PTCRAQ6ISU1 281 aaPredicted RBP8.34□□□□□ -1.07
TCF4-249ENST00000625716 SETDB2Q96T68 719 aa8.34□□□□□ -1.07
TCF4-249ENST00000625716 PIM2Q9P1W9 311 aa8.34□□□□□ -1.07
TCF4-249ENST00000625716 SIPA1L3O60292 1781 aaPredicted RBP8.34□□□□□ -1.07
TCF4-249ENST00000625716 GIGYF1O75420 1035 aaPredicted RBP8.33□□□□□ -1.08
TCF4-249ENST00000625716 C4AP0C0L4 1744 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms